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CmoCh08G002400 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G002400
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 1 isoform X1
Genome locationCmo_Chr08:1448744..1455641
RNA-Seq ExpressionCmoCh08G002400
SyntenyCmoCh08G002400
Gene Ontology termsGO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR009067 - TAFII-230 TBP-binding
IPR036741 - TAFII-230 TBP-binding domain superfamily
IPR040240 - Transcription initiation factor TFIID subunit 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593022.1 Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-7382.29Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID              L   S  + S AI  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIH S
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

KAG7025432.1 Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. argyrosperma]7.3e-7482.81Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID              L   S  + S AI  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

XP_022959797.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata]7.3e-7482.81Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID              L   S  + S AI  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

XP_023004897.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima]8.1e-7381.77Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLG TLTDID              L   S  + S A+  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

XP_023513701.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo]1.4e-7280.73Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID              L   S  + S A+  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTAS+FDDEDYDEDIEKVHEVANRSVVAP+IHA+
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

TrEMBL top hitse value%identityAlignment
A0A0A0KA05 Uncharacterized protein1.5e-6473.96Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDID              L   SS + S A+  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDA+DYEDIDEEYDGPEIEAAGEEDHLLP++EYFSAEVSL TLEPTASVFDDEDYDED E V +V N SV    IHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

A0A1S3C886 transcription initiation factor TFIID subunit 1 isoform X15.7e-6472.92Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDID              L   SS + S A+  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDA+DYEDIDEEYDGPEIEA GEEDHLLP++EYFSAEVSL TLEPTA VFDDEDYDED EKV ++ N SV    IHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

A0A5A7SLH8 Transcription initiation factor TFIID subunit 1 isoform X15.7e-6472.92Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDS DERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDID              L   SS + S A+  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDA+DYEDIDEEYDGPEIEA GEEDHLLP++EYFSAEVSL TLEPTA VFDDEDYDED EKV ++ N SV    IHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

A0A6J1H5J5 transcription initiation factor TFIID subunit 1 isoform X13.5e-7482.81Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDID              L   S  + S AI  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

A0A6J1L0S9 transcription initiation factor TFIID subunit 1 isoform X13.9e-7381.77Show/hide
Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM
        MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLG TLTDID              L   S  + S A+  
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILM

Query:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
        +        YDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS
Subjt:  EYSSSIILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHAS

SwissProt top hitse value%identityAlignment
Q67W65 Transcription initiation factor TFIID subunit 11.0e-4158.39Show/hide
Query:  DEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAK
        D+DD+DY++ GGGN  LGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DID+                    +   A   + S     +YDAK
Subjt:  DEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNYDAK

Query:  AEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIE
        AEDA+DYEDIDEEYDGPE+EAA EEDHLL KK+YFS+     ++    SVFD+E+YDED E
Subjt:  AEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIE

Q6PUA2 Transcription initiation factor TFIID subunit 1b8.3e-1257.35Show/hide
Query:  IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEKVHEVANRS
        +DY   DEEYDGPE++   EEDHLLPK+EY SA  +L  L   ASVFDDEDYDE    EK H    +S
Subjt:  IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEKVHEVANRS

Q8LRK9 Transcription initiation factor TFIID subunit 13.6e-3956.32Show/hide
Query:  GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSI
        G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +L DI              +L+  S   A        S   
Subjt:  GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSI

Query:  ILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
          +YD KAEDA+DYEDIDEEYDGPE++   EEDHLLPKKEYFS  V+L +L+  ASVFDDEDYDE+ E+  E A
Subjt:  ILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA

Arabidopsis top hitse value%identityAlignment
AT1G32750.1 HAC13 protein (HAC13)2.5e-4056.32Show/hide
Query:  GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSI
        G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +L DI              +L+  S   A        S   
Subjt:  GDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSI

Query:  ILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA
          +YD KAEDA+DYEDIDEEYDGPE++   EEDHLLPKKEYFS  V+L +L+  ASVFDDEDYDE+ E+  E A
Subjt:  ILNYDAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVA

AT3G19040.1 histone acetyltransferase of the TAFII250 family 25.9e-1357.35Show/hide
Query:  IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEKVHEVANRS
        +DY   DEEYDGPE++   EEDHLLPK+EY SA  +L  L   ASVFDDEDYDE    EK H    +S
Subjt:  IDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDED--IEKVHEVANRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGT
GGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAA
TTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGCAATCCTGATGGAGTACAGTTCAAGCATTATTTTAAATTAT
GATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATA
TTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCG
TTGTAGCTCCAACCATCCATGCATCAGTTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGCGAAACATACGGTGATTCCCAAGACGAAAGGGATGAAGATGATGATGACTATGAGGATGCTGGTGGTGGCAATCGATTATTGGGGTTTATGTTTGGGAATGT
GGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCAAAGGAACATCTGGCTGCACTGGCGGATAAGTTGGGTCCAACTTTGACAGATATTGATGTAAGAA
TTTTTATGATTCTGAATATCCTCTATAGTTTTCATTTGGTTTTGTGGTCTTCGTATGTAGCTTCCTGTGCAATCCTGATGGAGTACAGTTCAAGCATTATTTTAAATTAT
GATGCGAAGGCTGAAGATGCAATCGACTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATTGAAGCTGCTGGAGAGGAAGACCACTTATTGCCAAAAAAGGAATA
TTTTTCTGCTGAAGTTTCTTTGCCTACACTGGAGCCTACAGCTTCTGTATTTGATGATGAAGATTATGATGAGGACATTGAAAAGGTGCACGAAGTTGCAAATAGAAGCG
TTGTAGCTCCAACCATCCATGCATCAGTTAGTTAG
Protein sequenceShow/hide protein sequence
MGGETYGDSQDERDEDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDVRIFMILNILYSFHLVLWSSYVASCAILMEYSSSIILNY
DAKAEDAIDYEDIDEEYDGPEIEAAGEEDHLLPKKEYFSAEVSLPTLEPTASVFDDEDYDEDIEKVHEVANRSVVAPTIHASVS