CuGenDBv2

Gene ID	CmoCh08G002640
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S2, chloroplastic
Genome location	Cmo_Chr08:1631149..1631503
RNA-Seq Expression	CmoCh08G002640
Synteny	CmoCh08G002640
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009536 - plastid (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001865 - Ribosomal protein S2 IPR005706 - Ribosomal protein S2, bacteria/mitochondria/plastid IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88761.1 ribosomal protein S2, partial [Lagenaria siceraria]

3.7e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

QJS52344.1 ribosomal protein S2 [Indofevillea khasiana]

3.7e-25

68.75

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Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

YP_009674380.1 ribosomal protein S2 [Siraitia grosvenorii]

3.7e-25

68.75

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Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

YP_009751474.1 ribosomal protein S2 [Thladiantha dubia]

3.7e-25

68.75

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Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

YP_009752064.1 ribosomal protein S2 [Dendrosicyos socotranus]

3.7e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE54 Ribosomal protein S2

1.8e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

A0A1X9Q1S8 30S ribosomal protein S2, chloroplastic

1.8e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

A0A218KG32 30S ribosomal protein S2, chloroplastic

1.8e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

A0A249RZA5 30S ribosomal protein S2, chloroplastic

1.8e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

A0A2Z2CQF0 30S ribosomal protein S2, chloroplastic

1.8e-25

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

SwissProt top hits

e value

%identity

Alignment

B2LMI3 30S ribosomal protein S2, chloroplastic

1.2e-26

66.67

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQ EEY  LQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

Q09X28 30S ribosomal protein S2, chloroplastic

1.2e-26

66.67

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAAI--------DNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNW TTETRLHKFRDLRTEQKT   +   +RDAA+          YL       GLP IVIIVDQQEEY ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAAI--------DNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

Q1KXW9 30S ribosomal protein S2, chloroplastic

3.2e-27

67.71

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQ EEY ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

Q4VZP4 30S ribosomal protein S2, chloroplastic

4.9e-28

68.75

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQQEEY+ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

Q56P10 30S ribosomal protein S2, chloroplastic

3.2e-27

67.71

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTETRLHKFRDLRTEQKT G     +RDAA        +  YL       GLP IVIIVDQ EEY ALQ CIT  IPTICLIDTNCDPDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAA--------IDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

3.6e-26

63.54

Show/hide

Query:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAAI--------DNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL
        MLTNWSTTE RLHKFRDLRTEQKT G     +RDAA+        + YL       GLP IVII+DQQEEY AL+ CIT  IPTI LIDTNC+PDL
Subjt:  MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAAI--------DNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDL

Sequences

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CDS sequence

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ATGTTAACAAATTGGTCTACTACCGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACAAGGGGGACTCAACCGTCTTCTGAAAGGGATGCTGCTAT
AGACAATTATCTCACTTCCAAACATATCTGGGCTGGATTACCCGGTATTGTAATAATCGTTGATCAACAAGAAGAATATCAGGCTCTTCAAGGATGTATCACGTTCGAAA
TTCCAACTATTTGTTTAATAGATACAAATTGTGACCCAGATCTCGAATATTTTGATTCCAACATTATCCAGTGCTTCCAAAATGGACTTTCTTCCTTCTCTTCAATAAAA
TCTCGAGTCGATAAATAA

mRNA sequence

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Protein sequence

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MLTNWSTTETRLHKFRDLRTEQKTRGTQPSSERDAAIDNYLTSKHIWAGLPGIVIIVDQQEEYQALQGCITFEIPTICLIDTNCDPDLEYFDSNIIQCFQNGLSSFSSIK
SRVDK

CmoCh08G002640 (gene) of Cucurbita moschata (Rifu) v1 genome