; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G003070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G003070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPSII 6.1 kDa protein
Genome locationCmo_Chr08:1882880..1883808
RNA-Seq ExpressionCmoCh08G003070
SyntenyCmoCh08G003070
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593088.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.7e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_022959615.1 photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita moschata]5.7e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_022959616.1 photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita moschata]2.3e-66100Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_023004263.1 photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita maxima]2.2e-6498.55Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_023514759.1 photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]2.4e-6396.35Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVASASAAAVRSSLVQ+RP PAASPTTFLLGLPALGKRGGVRCCVDGKANGEVEN SCNL MGASLIA ACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A1S3BQI5 PSII 6.1 kDa protein2.8e-5789.13Show/hide
Query:  MAAVASASAAAVRSSLVQNRP-LPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAV SA+AAAVR+SLVQNRP LP+ASP  FLLGLPALGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRP-LPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein1.1e-66100Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1H6S9 PSII 6.1 kDa protein2.8e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1KPY5 PSII 6.1 kDa protein2.6e-6397.84Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1KYY4 PSII 6.1 kDa protein1.1e-6498.55Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.3e-3059.12Show/hide
Query:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL
        AS  A  S++   RP     PT  +    LGLP +G K+GGVRC ++ K     +     +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGL
Subjt:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWTF+ VYTS+LEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic5.4e-3458.99Show/hide
Query:  MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MA + ++S+A++  R+SLV N  +  +S    +LGLP++ KR  V C ++ K +      + N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLPF
Subjt:  MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWIL GVFG IW  Y VY S LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic8.1e-2252.21Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGG--VRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MA V++A+A +V +  V   P          LGLP +  R    VRC    +A       +   G GASL+A A  A   +PAMALVDER+STEGTGL  
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGG--VRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESG
        GLSNNLLGWILLGVFG IW+ Y +YTS LEEDEESG
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.6e-0942.47Show/hide
Query:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLE--EDEESGLSL
        ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +W  + +    L   ED + GL L
Subjt:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W8.9e-3259.12Show/hide
Query:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL
        AS  A  S++   RP     PT  +    LGLP +G K+GGVRC ++ K     +     +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGL
Subjt:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWTF+ VYTS+LEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGCTCTTCTCTGGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGGGTTGCCTGCATT
GGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGACGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGTGTG
CTGCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACCGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTG
GGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAGGAGGACGAAGAATCAGGCTTATCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
CTCATCGACACAAACCAATAATATTAATCTTCACAAACCCTTTCATCTCCGATCTCCATATTCCATTATTTTTCATTTTGCCTCCCAAAGTTGAACGTAAAGATCCCAAT
GGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGCTCTTCTCTGGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGGGTTGCCTGCATTGG
GTAAGAGAGGAGGAGTAAGGTGTTGTGTGGACGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGTGTGCT
GCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACCGAAGGAACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGG
AGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAGGAGGACGAAGAATCAGGCTTATCTCTGTAAACCAAACTTGTCATCTTATTATTACGAT
CGTTGTGGCTAATCTTAGAAGCTTCTATTGTTCAAATATCAATGAAGAAGAAGGAAACAACGTTCTAAATGGCTTCTAATTTCATATGAATTTTGAATGAACAAAATAAG
ATTTAGGAGTCAAAAGTTAAGCCTAATTGTTTGAGATGATGATGTATATCTTCTGGATGATCGTCAAATTTTGATCTATCGGGTTGTATCCAACGACCATCCTTATTCCT
TATCATACCTTTGTTTTCGTCTTGCCTCCAATTTGGTGGGACCAAGTAATGATCTTTAAGAAAATCACAAGCTTTGTTCACCAGCG
Protein sequenceShow/hide protein sequence
MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
GVFGFIWTFYIVYTSTLEEDEESGLSL