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CmoCh08G003700 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G003700
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHistone H2A
Genome locationCmo_Chr08:2321048..2323998
RNA-Seq ExpressionCmoCh08G003700
SyntenyCmoCh08G003700
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR009072 - Histone-fold
IPR032454 - Histone H2A, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593149.1 putative histone H2AXa, partial [Cucurbita argyrosperma subsp. sororia]5.4e-3098.61Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNERRGADHLLSDVNIANGVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSAAFEYPAAEVLELADNATRDNERRGAD LLSDVNIANGVLPNIHQNLLPNMAGSGKNNIESASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNERRGADHLLSDVNIANGVLPNIHQNLLPNMAGSGKNNIESASQEF

KAG7014408.1 Histone H2AX, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-1360.23Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQNLLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

XP_008451417.1 PREDICTED: histone H2AX [Cucumis melo]7.9e-1359.09Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQ LLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

XP_022150163.1 histone H2AX [Momordica charantia]1.6e-1360.23Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQNLLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

XP_022953583.1 histone H2AX [Cucurbita moschata]1.6e-1360.23Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQNLLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

TrEMBL top hitse value%identityAlignment
A0A0A0K7H2 Histone H2A3.8e-1359.09Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQ LLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

A0A5A7UVH7 Histone H2A3.8e-1359.09Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQ LLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

A0A6J1D8Q1 Histone H2A7.7e-1460.23Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQNLLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

A0A6J1GNQ0 Histone H2A7.7e-1460.23Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQNLLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

A0A6J1JMN9 Histone H2A7.7e-1460.23Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL DV IAN GVLPNIHQNLLP  AGSGK +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

SwissProt top hitse value%identityAlignment
A2ZL69 Probable histone H2AXb3.1e-1253.41Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNI-ANGVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL  V I A GVLPNIHQ LLP   G  K +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNI-ANGVLPNIHQNLLPNMAGSGKNNIESASQEF

O04848 Probable histone H2AXa1.6e-1354.55Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN GVLPNIHQ LLP+  G  K +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

O65759 Histone H2AX9.6e-1455.68Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN+                     LL  V IAN GVLPNIHQ LLP   G GK  I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

P35063 Histone H2AX2.4e-1253.41Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYL+A  EY AAEVLELA NA RDN++                    LL  V IAN GVLPNIHQ LLP  +G  K  I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

Q9S9K7 Probable histone H2AXb1.6e-1354.55Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN GVLPNIHQ LLP+  G  K +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

Arabidopsis top hitse value%identityAlignment
AT1G08880.1 Histone superfamily protein1.2e-1454.55Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN GVLPNIHQ LLP+  G  K +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

AT1G54690.1 gamma histone variant H2AX1.2e-1454.55Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF
        APVYLSA  EY AAEVLELA NA RDN++                    LL  V IAN GVLPNIHQ LLP+  G  K +I SASQEF
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGKNNIESASQEF

AT3G20670.1 histone H2A 137.8e-1151.28Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGK
        APVYL+A  EY AAEVLELA NA RDN++                    LL DV IAN GV+PNIH  LLP  AG+ K
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGK

AT4G27230.1 histone H2A 23.5e-1152.56Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGK
        APVYL+A  EY AAEVLELA NA RDN++                    LL DV IAN GV+PNIH  LLP  AGS K
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGK

AT4G27230.2 histone H2A 23.5e-1152.56Show/hide
Query:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGK
        APVYL+A  EY AAEVLELA NA RDN++                    LL DV IAN GV+PNIH  LLP  AGS K
Subjt:  APVYLSAAFEYPAAEVLELADNATRDNER---------------RGADHLLSDVNIAN-GVLPNIHQNLLPNMAGSGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACCAGTTGAATTTTTATTGTCTCGCATTCTCGCACCTGTCTACCTCTCCGCTGCCTTTGAATATCCCGCCGC
CGAGGTGCTTGAGCTTGCAGACAATGCTACCAGAGACAACGAACGGCGAGGAGCTGACCATCTCTTGAGTGATGTGAACATTGCAAATGGAGTGTTGCCGAATATCCATC
AAAACCTCTTGCCTAATATGGCGGGATCAGGCAAAAACAACATTGAATCTGCATCACAAGAGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACCAGTTGAATTTTTATTGTCTCGCATTCTCGCACCTGTCTACCTCTCCGCTGCCTTTGAATATCCCGCCGC
CGAGGTGCTTGAGCTTGCAGACAATGCTACCAGAGACAACGAACGGCGAGGAGCTGACCATCTCTTGAGTGATGTGAACATTGCAAATGGAGTGTTGCCGAATATCCATC
AAAACCTCTTGCCTAATATGGCGGGATCAGGCAAAAACAACATTGAATCTGCATCACAAGAGTTCTAAAAGTTTCTGATCATCAACAAATTTTGATACACGAGGGCATGA
CTTTGATATCATGTTAAGAATCACTGATTTCCAGTATGGTTTTGGGCTTCCCAAAAGATCTTGTACCAACAGAGATAGTATTATTTTATTATAAACTCATGATTATTCTC
TAAATTAGTCGATGTGGGACTTTTATCC
Protein sequenceShow/hide protein sequence
MLMKFTTNLNRKEPVEFLLSRILAPVYLSAAFEYPAAEVLELADNATRDNERRGADHLLSDVNIANGVLPNIHQNLLPNMAGSGKNNIESASQEF