CuGenDBv2

Gene ID	CmoCh08G004120
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Nucleolar protein 16
Genome location	Cmo_Chr08:2541473..2543056
RNA-Seq Expression	CmoCh08G004120
Synteny	CmoCh08G004120
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593193.1 hypothetical protein SDJN03_12669, partial [Cucurbita argyrosperma subsp. sororia]

5.4e-98

96.35

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVP SQLPSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
           LDS+GSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

KAG7030222.1 hypothetical protein SDJN02_08569 [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-97

95.83

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDP WDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVP SQLPSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
           LDS+GSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

XP_022960076.1 uncharacterized protein LOC111460931 [Cucurbita moschata]

1.4e-101

100

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL

Query:  DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
        DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

XP_023004668.1 uncharacterized protein LOC111497894 [Cucurbita maxima]

1.0e-96

95.83

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLL EQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVP SQLPSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
           LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYG+DYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

XP_023514821.1 nucleolar protein 16-like [Cucurbita pepo subsp. pepo]

2.4e-98

96.88

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVP SQLPSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
           LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VLA5 Nucleolar protein 16

2.1e-87

87.3

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL
        MGRSRRKYK+SRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVP S  P   L
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL

Query:  DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS-GKNPLILTR
        DSSGSDVEEDDLKTALGKKR+DGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSV TLEKLCKRYHS   KNPLILTR
Subjt:  DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS-GKNPLILTR

A0A6J1GRW5 Nucleolar protein 16

1.4e-88

90.16

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSR KVQVGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDPAWDEKASVI+NYKSFGVLSNPNLLSVRSRTDHIVESD LQVP S  PSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS-GKNPLILTR
           LDSSGSDVEEDDLKTALGKKRRDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSV TLEKLCKRYHS   KNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS-GKNPLILTR

A0A6J1H6M6 Nucleolar protein 16

6.6e-102

100

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGL

Query:  DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
        DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  DSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

6.4e-89

90.16

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSR KVQVGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDPAWDEKASVI+NYKSFGVLSNPNLLSVRSRTDHIVESDSLQVP S  PSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS-GKNPLILTR
           LDSSGSDVEEDDLKTALGKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSV TLEKLCKRYHS   KNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSS-GKNPLILTR

A0A6J1L083 Nucleolar protein 16

4.9e-97

95.83

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-
        MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLL EQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVP SQLPSD  
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDG-

Query:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
           LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYG+DYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Subjt:  ---LDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

SwissProt top hits

e value

%identity

Alignment

Q75AB6 Nucleolar protein 16

8.0e-04

35.14

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Query:  VEEDDLKTALGKKRRDGKSGPLKPLTTIQRVH----VGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY
        +E+D +KT + ++     S P+      Q       +GRL EK+G+DY  M  D KLN  Q SVG L++  K++
Subjt:  VEEDDLKTALGKKRRDGKSGPLKPLTTIQRVH----VGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

3.3e-61

59.39

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Query:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPS---
        M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+G   ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH+++ DSL VP    P    
Subjt:  MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPS---

Query:  ------DGLDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYH-SSGKNPLILT
              + +D SGS++EEDDLKTALGK+R+DGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSV TL KLC RY     KNP++++
Subjt:  ------DGLDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYH-SSGKNPLILT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAGGTCTCGAAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAATGTTTTCAAGCCGTCGTTCTGCATGCCGCCGAAGCT
CCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGCATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCTAATTTGCTCA
GCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCAACGTCTCAGCTGCCTTCCGATGGTCTTGATTCATCCGGTAGCGATGTGGAAGAGGAC
GATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCTGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGG
AGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCAT
TGATATTGACTCGTTAA

mRNA sequence

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CCCCAATCATCTTCTACATCTAAACCCTAGCCACCGGCTTCACCGATCTGCAGAGGGAGATGGGAAGGTCTCGAAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTC
GGCCTGCCGAAAAGGCACCCTAATGTTTTCAAGCCGTCGTTCTGCATGCCGCCGAAGCTCCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGCATGGGATGAGAA
AGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTC
CAACGTCTCAGCTGCCTTCCGATGGTCTTGATTCATCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCTGGACCT
CTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCA
CTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAAAGATATTATCGATGGAACAACCCCATCGTCTTTC
AAATTGTTTTGTTACAATAGATGAATCGGATATGGTATTATGATCATGAAATCTAATGGAGCAACGTTGTTCGACCACAAGTATATGAGGCTTGAAAAGATGGCTCATTC
ATTCTCTTGCTTGCAGCAGTTTTCTTCCTTTCTAGAAAATGCTCATAAGGACCCATGTTTAGTAAGTGGCATGTACAGAGCATTTTGATTTTGGGGAAACTGACTGTTTT
GCAAAAATTTTAGGTTGTATGTAATATCTTATAAAAATTCCCAGATGCATTTTTGATATGTTTGAATCCATGAAATTGACATCCAAATCTATTTACAATCGAATGACCGC
ATCTTACGAA

Protein sequence

Show/hide protein sequence

MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPTSQLPSDGLDSSGSDVEED
DLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

CmoCh08G004120 (gene) of Cucurbita moschata (Rifu) v1 genome