; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G004190 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G004190
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L22-2-like
Genome locationCmo_Chr08:2570564..2571924
RNA-Seq ExpressionCmoCh08G004190
SyntenyCmoCh08G004190
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002671 - Ribosomal protein L22e
IPR038526 - Ribosomal protein L22e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136027.1 60S ribosomal protein L22-2 [Cucumis sativus]1.3e-6099.21Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_022960081.1 60S ribosomal protein L22-2-like [Cucurbita moschata]2.7e-61100Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_022991268.1 60S ribosomal protein L22-2-like [Cucurbita maxima]6.7e-6097.62Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYEL+YFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_023514139.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo]2.5e-5997.62Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGA GDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKD NVYELRYFN AENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

XP_023548993.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo]3.0e-6098.41Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

TrEMBL top hitse value%identityAlignment
A0A0A0K637 Uncharacterized protein6.5e-6199.21Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A5D3D2W6 60S ribosomal protein L22-2-like6.5e-6199.21Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A6J1DLK6 60S ribosomal protein L22-26.5e-6199.21Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A6J1H6N1 60S ribosomal protein L22-2-like1.3e-61100Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

A0A6J1KR51 60S ribosomal protein L22-2-like1.3e-61100Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKDRNVYELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

SwissProt top hitse value%identityAlignment
P47198 60S ribosomal protein L221.4e-3163.64Show/hide
Query:  ASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK
        A GG K KK+   F +DC  PVED IMD A+ E+FL ERIKV GKAG LG   VT+ R K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K
Subjt:  ASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK

Query:  DRNVYELRYFNIAENEGEEED
        +   YELRYF I ++E EEED
Subjt:  DRNVYELRYFNIAENEGEEED

Q98TF8 60S ribosomal protein L222.3e-3163.11Show/hide
Query:  AASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASN
        AA GG K KK+   F +DC  PVED IMD A+ E+FL ERIKV GKAG LG   VT+ R K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++
Subjt:  AASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASN

Query:  KDRNVYELRYFNIAENEGEEED
        K+   YELRYF I ++E EEE+
Subjt:  KDRNVYELRYFNIAENEGEEED

Q9FE58 60S ribosomal protein L22-37.7e-5181.75Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA+   KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENE EEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

Q9M9W1 60S ribosomal protein L22-26.9e-5283.33Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

Q9SRX7 Putative 60S ribosomal protein L22-19.4e-4168.25Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        M+R  A S G   KKKG +FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV++TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKD+NVYE+RYF I +     E+
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

Arabidopsis top hitse value%identityAlignment
AT1G02830.1 Ribosomal L22e protein family6.7e-4268.25Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        M+R  A S G   KKKG +FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV++TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IASNKD+NVYE+RYF I +     E+
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT3G05560.1 Ribosomal L22e protein family4.9e-5383.33Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT3G05560.2 Ribosomal L22e protein family4.9e-5383.33Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT3G05560.3 Ribosomal L22e protein family4.9e-5383.33Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENEGEEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED

AT5G27770.1 Ribosomal L22e protein family5.4e-5281.75Show/hide
Query:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV
        MSRG AA+   KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRV
Subjt:  MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRV

Query:  IASNKDRNVYELRYFNIAENEGEEED
        IA+NKDRN+YELRYFNIAENE EEED
Subjt:  IASNKDRNVYELRYFNIAENEGEEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGCTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTC
CTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGGGACAAGAACAAGATCACCGTTAACTCCGATA
GCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTAATCGCTTCGAACAAGGACCGCAACGTCTAT
GAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
GAGCCTTAAAACCGCAACTCAAAACCCTAAAATCAGCGCCGATTGTTGTGTAACATTTCTACAGGAAATTTGGGCAGCGAGTTGCAGAGAAGGAGCAAAAATGAGCCGTG
GAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGCTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCCTTGGAGAAG
TTTCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGGGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTC
CAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTAATCGCTTCGAACAAGGACCGCAACGTCTATGAATTAAGAT
ACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGAGGTTCAAGGCCTATATTTTGGAAGCATCGTTTGTAGTAGGAATTAAGCTTGTTGAAATTATATTTCCAT
ACCTTGTCTTGAAGCTTTCCATATAGATCAGCAAGGATTCTTTTGAGTTATGAGATTATGCAACTCTTGTTTACTACTGCTGAAGTTTTATCTATAAATTTTGTTCACGA
AGCTCACCCCACTTCTTTTG
Protein sequenceShow/hide protein sequence
MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVY
ELRYFNIAENEGEEED