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CmoCh08G004410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G004410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGATA transcription factor 15-like
Genome locationCmo_Chr08:2741465..2741903
RNA-Seq ExpressionCmoCh08G004410
SyntenyCmoCh08G004410
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000679 - Zinc finger, GATA-type
IPR013088 - Zinc finger, NHR/GATA-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046674.1 GATA transcription factor 15-like [Cucumis melo var. makuwa]1.7e-3364.39Show/hide
Query:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK----------NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RAT
        A+S QGL  +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K          N+N   NK   GKK+       +RVV LGREIM+H R T
Subjt:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK----------NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RAT

Query:  AAMAENGGAETIGEEEQAAAMLLMALSSGYVS
         AM +NG AE+IGEEEQ AAMLLMALSSGYVS
Subjt:  AAMAENGGAETIGEEEQAAAMLLMALSSGYVS

XP_011659382.1 GATA transcription factor 15 [Cucumis sativus]7.5e-3466.15Show/hide
Query:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK---NSNGGVNKSVN-----GKKV--------VRVVGLGREIMLHRATAA
        A+S +GLL +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K   N+NGGVN + N     GKK+        VRVV LGREIM+HR T A
Subjt:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK---NSNGGVNKSVN-----GKKV--------VRVVGLGREIMLHRATAA

Query:  MA-ENGGAETIGEEEQAAAMLLMALSSGYV
        M  +N  AE+IGEEEQ AA+LLMALSSGYV
Subjt:  MA-ENGGAETIGEEEQAAAMLLMALSSGYV

XP_022959984.1 GATA transcription factor 15-like [Cucurbita moschata]1.7e-57100Show/hide
Query:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
        MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
Subjt:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ

Query:  AAAMLLMALSSGYVS
        AAAMLLMALSSGYVS
Subjt:  AAAMLLMALSSGYVS

XP_023004687.1 GATA transcription factor 15-like [Cucurbita maxima]2.6e-5596.52Show/hide
Query:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
        MAISNQGLLC EPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN+NGGVNKS NGKKVVRVVGLGREIMLHR TAAMAENGGAETIGEEEQ
Subjt:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ

Query:  AAAMLLMALSSGYVS
        AAAMLLMALSSGYVS
Subjt:  AAAMLLMALSSGYVS

XP_023515141.1 GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]2.6e-5597.39Show/hide
Query:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
        MAISN GLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKS NGKKVVRVV LGREIMLHRATAAMAENGGAETIGEEEQ
Subjt:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ

Query:  AAAMLLMALSSGYVS
        AAAMLLMALSSGYVS
Subjt:  AAAMLLMALSSGYVS

TrEMBL top hitse value%identityAlignment
A0A0A0K6B1 GATA-type domain-containing protein3.6e-3466.15Show/hide
Query:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK---NSNGGVNKSVN-----GKKV--------VRVVGLGREIMLHRATAA
        A+S +GLL +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K   N+NGGVN + N     GKK+        VRVV LGREIM+HR T A
Subjt:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK---NSNGGVNKSVN-----GKKV--------VRVVGLGREIMLHRATAA

Query:  MA-ENGGAETIGEEEQAAAMLLMALSSGYV
        M  +N  AE+IGEEEQ AA+LLMALSSGYV
Subjt:  MA-ENGGAETIGEEEQAAAMLLMALSSGYV

A0A1S3BSR7 GATA transcription factor 15-like2.3e-3362.5Show/hide
Query:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK--------------NSNGGVNKSVNGKKV-------VRVVGLGREIMLH
        A+S QGL  +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K              N+N   NK   GKK+       +RVV LGREIM+H
Subjt:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK--------------NSNGGVNKSVNGKKV-------VRVVGLGREIMLH

Query:  -RATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
         R T AM +NG AE+IGEEEQ AAMLLMALSSGYVS
Subjt:  -RATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS

A0A5A7TUD0 GATA transcription factor 15-like8.1e-3464.39Show/hide
Query:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK----------NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RAT
        A+S QGL  +E +KQR C HCR TRTPLWRAGPAGPRSLCNACGIRYRK+K          N+N   NK   GKK+       +RVV LGREIM+H R T
Subjt:  AISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLK----------NSNGGVNKSVNGKKV-------VRVVGLGREIMLH-RAT

Query:  AAMAENGGAETIGEEEQAAAMLLMALSSGYVS
         AM +NG AE+IGEEEQ AAMLLMALSSGYVS
Subjt:  AAMAENGGAETIGEEEQAAAMLLMALSSGYVS

A0A6J1H9M3 GATA transcription factor 15-like8.0e-58100Show/hide
Query:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
        MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
Subjt:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ

Query:  AAAMLLMALSSGYVS
        AAAMLLMALSSGYVS
Subjt:  AAAMLLMALSSGYVS

A0A6J1KR45 GATA transcription factor 15-like1.3e-5596.52Show/hide
Query:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ
        MAISNQGLLC EPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN+NGGVNKS NGKKVVRVVGLGREIMLHR TAAMAENGGAETIGEEEQ
Subjt:  MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQ

Query:  AAAMLLMALSSGYVS
        AAAMLLMALSSGYVS
Subjt:  AAAMLLMALSSGYVS

SwissProt top hitse value%identityAlignment
Q5HZ36 GATA transcription factor 211.0e-0965.79Show/hide
Query:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS
        R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Subjt:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS

Q6YW48 Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 17.8e-1060.87Show/hide
Query:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN-----SNGG
        R C  C TT+TPLWR+GP GP+SLCNACGIR RK +      +NGG
Subjt:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN-----SNGG

Q8LC59 GATA transcription factor 232.1e-1034.62Show/hide
Query:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSS
        R C  C+TT+TP+WR GP GP+SLCNACGIR+RK + S             + ++   + +   +     + +GG       ++ EEEQAA  LL+   S
Subjt:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSS

Query:  GYVS
          ++
Subjt:  GYVS

Q8LG10 GATA transcription factor 152.8e-1546.3Show/hide
Query:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA
        ++++C  C T++TPLWR GPAGP+SLCNACGIR RK             K  +   N         R++ LGRE+M+ R+T   AEN     +GEEEQ A
Subjt:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA

Query:  AMLLMALS
        A+LLMALS
Subjt:  AMLLMALS

Q9FJ10 GATA transcription factor 167.6e-1343.75Show/hide
Query:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA
        K++TC  C T++TPLWR GP GP+SLCNACGIR RK             K+S+GG N+         ++ LG   +  R+T         + +GEEEQ A
Subjt:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA

Query:  AMLLMALSSGYV
        A+LLMALS G V
Subjt:  AMLLMALSSGYV

Arabidopsis top hitse value%identityAlignment
AT3G06740.1 GATA transcription factor 152.0e-1646.3Show/hide
Query:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA
        ++++C  C T++TPLWR GPAGP+SLCNACGIR RK             K  +   N         R++ LGRE+M+ R+T   AEN     +GEEEQ A
Subjt:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA

Query:  AMLLMALS
        A+LLMALS
Subjt:  AMLLMALS

AT4G26150.1 cytokinin-responsive gata factor 19.5e-1165.79Show/hide
Query:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS
        R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Subjt:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS

AT5G26930.1 GATA transcription factor 231.5e-1134.62Show/hide
Query:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSS
        R C  C+TT+TP+WR GP GP+SLCNACGIR+RK + S             + ++   + +   +     + +GG       ++ EEEQAA  LL+   S
Subjt:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSS

Query:  GYVS
          ++
Subjt:  GYVS

AT5G49300.1 GATA transcription factor 165.4e-1443.75Show/hide
Query:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA
        K++TC  C T++TPLWR GP GP+SLCNACGIR RK             K+S+GG N+         ++ LG   +  R+T         + +GEEEQ A
Subjt:  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAA

Query:  AMLLMALSSGYV
        A+LLMALS G V
Subjt:  AMLLMALSSGYV

AT5G56860.1 GATA type zinc finger transcription factor family protein7.3e-1165.79Show/hide
Query:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS
        R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Subjt:  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGCCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCC
AAGGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGG
GGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCT
TCAGGCTATGTATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGCCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCC
AAGGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGG
GGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCT
TCAGGCTATGTATCATAA
Protein sequenceShow/hide protein sequence
MAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALS
SGYVS