CuGenDBv2

Gene ID	CmoCh08G004500
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	BRCT domain-containing protein
Genome location	Cmo_Chr08:2782652..2783181
RNA-Seq Expression	CmoCh08G004500
Synteny	CmoCh08G004500
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR036420 - BRCT domain superfamily IPR044254 - BRCT domain-containing protein At4g02110-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575781.1 BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-14

76.47

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

KAG6593231.1 BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-32

97.26

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCVMTWRGLKLRLRILKKNLAVASL
        FVLFGFNHFDEKQIQATLIYGGGVDIGQYG NCTHVIVNKDKIVYDDPVCVMTW GLKLRLRILKKNLAVASL
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCVMTWRGLKLRLRILKKNLAVASL

KAG7014323.1 BRCT domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-14

76.47

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

XP_022991619.1 BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita maxima]

3.5e-15

78.43

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN+FDEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

XP_023548771.1 BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita pepo subsp. pepo]

1.7e-14

76.47

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BRK5 BRCT domain-containing protein At4g02110 isoform X1

5.4e-14

74.51

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN  DEKQ+++ LI GGGVD+GQYG +C+HVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

A0A5D3D1U4 BRCT domain-containing protein

5.4e-14

74.51

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN  DEKQ+++ LI GGGVD+GQYG +C+HVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

A0A6J1D9V0 BRCT domain-containing protein At4g02110 isoform X1

1.1e-14

76.47

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGF+H DEK++++ LI GGGVD GQYG +CTHVIV+KDKIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

A0A6J1GMX9 BRCT domain-containing protein At4g02110 isoform X1

8.4e-15

76.47

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

A0A6J1JVC5 BRCT domain-containing protein At4g02110 isoform X1

1.7e-15

78.43

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        FVLFGFN+FDEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

SwissProt top hits

e value

%identity

Alignment

O04251 BRCT domain-containing protein At4g02110

8.6e-09

50.98

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        F L GFN      +++ L+ GGGVD+GQ+  +CTH+IV  DK++YDDP+CV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

Arabidopsis top hits

e value

%identity

Alignment

AT4G02110.1 transcription coactivators

6.1e-10

50.98

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Query:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV
        F L GFN      +++ L+ GGGVD+GQ+  +CTH+IV  DK++YDDP+CV
Subjt:  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV

Sequences

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CDS sequence

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ATGTTTTCGTTGATCTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAA
TTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAG
CAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA

mRNA sequence

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Protein sequence

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MFSLIFVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCVMTWRGLKLRLRILKKNLAVASLNICEEEQEES

CmoCh08G004500 (gene) of Cucurbita moschata (Rifu) v1 genome