CuGenDBv2

Gene ID	CmoCh08G004700
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription factor UPBEAT1
Genome location	Cmo_Chr08:2908205..2908588
RNA-Seq Expression	CmoCh08G004700
Synteny	CmoCh08G004700
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR036638 - Helix-loop-helix DNA-binding domain superfamily IPR044660 - Transcription factor IBH1-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]

9.2e-17

46.78

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Query:  MGVYPETLLLVQLNM----------------------------KEPSQDETSMEEQQE-----QQEAIAKSFN-----RRRRSSNSLMKKRRSR------
        MGV  ETLL +QLNM                            K+  ++E   EE QE     + ++   + N     RRR  SNSL+ K+RSR      
Subjt:  MGVYPETLLLVQLNM----------------------------KEPSQDETSMEEQQE-----QQEAIAKSFN-----RRRRSSNSLMKKRRSR------

Query:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND
         S++RIEQRV+ LRNLVPN +N+ ++ ESC  GSLEQLFTQTADYILSLQTRVR MK LV+VLS  SSS D
Subjt:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-26

64.89

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Query:  MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQ
        MG +P TLLL+QLNM+EP+QD         ++SMEE+Q+      KS  RRRR+S SL KK R RSSTRI QRV+TLRNLVPNMNN+N+N ++  GSLEQ
Subjt:  MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQ

Query:  LFTQTADYILSLQTRVRFMKNLVNVLSASSS
        LFT TADYILSLQTRVRFM+ LV+VLS SSS
Subjt:  LFTQTADYILSLQTRVRFMKNLVNVLSASSS

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-52

93.23

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Query:  MGVYPETLLLVQLNMKEPSQDETSME------EQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT
        MGVYPETLLLVQLNMKEPSQDETSME      EQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT
Subjt:  MGVYPETLLLVQLNMKEPSQDETSME------EQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT

Query:  QTADYILSLQTRVRFMKNLVNVLSASSSSNDHE
        QTADYILSLQTRVRFMKNLV+VLSA  SSNDHE
Subjt:  QTADYILSLQTRVRFMKNLVNVLSASSSSNDHE

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-52

96.88

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Query:  MGVYPETLLLVQLNMKEPSQDETSMEE-QQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADY
        MGVYPETLLLVQLNMKEPSQDETSMEE QQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADY
Subjt:  MGVYPETLLLVQLNMKEPSQDETSMEE-QQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADY

Query:  ILSLQTRVRFMKNLVNVLSASSSSNDHE
        ILSLQTRVRFMKNLV+VLSA  SSNDHE
Subjt:  ILSLQTRVRFMKNLVNVLSASSSSNDHE

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]

2.2e-18

49.4

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Query:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQEQQ------------EAIAKSFNRRRRSSNSLMKKRRSR-----SSTRI
        MGV  ETLL +QLNM+  + +QD                    + SM+E++ Q+                +   RRR  SNSL+ K+RSR     SS+RI
Subjt:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQEQQ------------EAIAKSFNRRRRSSNSLMKKRRSR-----SSTRI

Query:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND
        EQRV+TLR+LVPN +N+N++   ESCVGSLEQLFTQTADYILSLQTRVR MK LV+VLS  SSS D
Subjt:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6D9 Uncharacterized protein

1.1e-18

49.4

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Query:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQEQQ------------EAIAKSFNRRRRSSNSLMKKRRSR-----SSTRI
        MGV  ETLL +QLNM+  + +QD                    + SM+E++ Q+                +   RRR  SNSL+ K+RSR     SS+RI
Subjt:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQEQQ------------EAIAKSFNRRRRSSNSLMKKRRSR-----SSTRI

Query:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND
        EQRV+TLR+LVPN +N+N++   ESCVGSLEQLFTQTADYILSLQTRVR MK LV+VLS  SSS D
Subjt:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND

A0A5A7TXU1 Transcription factor UPBEAT1

4.4e-17

46.78

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Query:  MGVYPETLLLVQLNM----------------------------KEPSQDETSMEEQQE-----QQEAIAKSFN-----RRRRSSNSLMKKRRSR------
        MGV  ETLL +QLNM                            K+  ++E   EE QE     + ++   + N     RRR  SNSL+ K+RSR      
Subjt:  MGVYPETLLLVQLNM----------------------------KEPSQDETSMEEQQE-----QQEAIAKSFN-----RRRRSSNSLMKKRRSR------

Query:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND
         S++RIEQRV+ LRNLVPN +N+ ++ ESC  GSLEQLFTQTADYILSLQTRVR MK LV+VLS  SSS D
Subjt:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASSSSND

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators

2.5e-04

37.36

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Query:  RRRRSSNSLMKK-----RRSRSSTR-----IEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASS
        RR+R+  +L+KK     R+S  ++R     I +RV TL+ LVPN   +          L+ LF QTADYIL+L+ +V+ M+ +V VL+ ++
Subjt:  RRRRSSNSLMKK-----RRSRSSTR-----IEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVNVLSASS

Sequences

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CDS sequence

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ATGGGAGTTTACCCAGAAACCCTTTTGCTAGTTCAACTCAACATGAAAGAACCATCCCAAGATGAAACATCAATGGAAGAACAACAAGAACAACAAGAAGCCATAGCCAA
GAGCTTCAACAGAAGAAGAAGAAGCAGCAACTCATTGATGAAGAAGAGAAGATCAAGATCATCAACTAGAATCGAGCAAAGAGTCAGCACATTAAGAAACCTCGTACCAA
ACATGAACAACAACAACAACAACCATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATATTGTCGCTGCAAACAAGAGTGAGATTCATG
AAGAATTTGGTTAATGTCTTATCTGCTTCTTCTTCTTCTAACGATCATGAGTGA

mRNA sequence

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Protein sequence

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MGVYPETLLLVQLNMKEPSQDETSMEEQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFM
KNLVNVLSASSSSNDHE

CmoCh08G004700 (gene) of Cucurbita moschata (Rifu) v1 genome