CuGenDBv2

Gene ID	CmoCh08G005100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	Cmo_Chr08:3195027..3196718
RNA-Seq Expression	CmoCh08G005100
Synteny	CmoCh08G005100
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-58

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSRTY
Subjt:  LKYELEGAFSRFSRTY

XP_022960210.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata]

4.4e-58

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSRTY
Subjt:  LKYELEGAFSRFSRTY

XP_022960212.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 [Cucurbita moschata]

1.2e-55

98.28

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSRTY
Subjt:  LKYELEGAFSRFSRTY

XP_023004699.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima]

1.3e-57

99.14

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRTY

XP_023004700.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 [Cucurbita maxima]

3.5e-55

97.41

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRTY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

8.4e-55

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELE   SRFSR Y
Subjt:  LKYELEGAFSRFSRTY

A0A6J1H6T9 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

5.8e-56

98.28

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSRTY
Subjt:  LKYELEGAFSRFSRTY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

2.1e-58

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSRTY
Subjt:  LKYELEGAFSRFSRTY

A0A6J1KVB7 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

1.7e-55

97.41

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRTY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

6.2e-58

99.14

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRTY

SwissProt top hits

e value

%identity

Alignment

O08740 DNA-directed RNA polymerase II subunit RPB11

2.3e-25

47.22

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGA
        L+    GA
Subjt:  LKYELEGA

Q32P79 DNA-directed RNA polymerase II subunit RPB11

2.5e-24

48.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

4.3e-48

77.59

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F VEREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LK + E   ++FS  +
Subjt:  LKYELEGAFSRFSRTY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

6.7e-25

49.02

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN+IRMQL  D +++FA Y++PHPL++ + +RIQT + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LK
        L+
Subjt:  LK

Q9VJE4 DNA-directed RNA polymerase II subunit RPB11

1.9e-24

48.15

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK+  E DTK+ NAA F + +EDHT+GN+IR QL +D NVLFA Y++PHPL+++ ++RIQT +  SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGA
         +   + A
Subjt:  LKYELEGA

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

3.0e-49

77.59

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F VEREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRTY
        LK + E   ++FS  +
Subjt:  LKYELEGAFSRFSRTY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

1.7e-44

61.64

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F VEREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VR                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------

Query:  ----IQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY
            I T SQSSPMQAYNQAINDLDKELD LK + E   ++FS  +
Subjt:  ----IQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY

Sequences

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CDS sequence

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ATGAACGTACCCGATCGTTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACTTTCATTGTAGAGAG
AGAGGATCATACTATCGGAAACATCATCCGCATGCAACTTCACAGAGATGATAATGTGCTGTTTGCTGCCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTC
GGATACAGACGGCTAGCCAGTCCTCGCCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTTGACGTTTTGAAATATGAGCTCGAGGGTGCGTTTTCT
AGGTTCTCGAGGACCTATTAG

mRNA sequence

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AAGAAAAAACGATGAACGTACCCGATCGTTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACTTTC
ATTGTAGAGAGAGAGGATCATACTATCGGAAACATCATCCGCATGCAACTTCACAGAGATGATAATGTGCTGTTTGCTGCCTACCAGCTTCCTCATCCTCTTAAGTACAG
AATACTTGTTCGGATACAGACGGCTAGCCAGTCCTCGCCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTTGACGTTTTGAAATATGAGCTCGAGG
GTGCGTTTTCTAGGTTCTCGAGGACCTATTAGTTTGCCTTAAAGAAAACCAAAGGGAAAGTTCTGTTATCTGACCATTTTAAGATTTCGATTCCTTGAATATGTG

Protein sequence

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MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFS
RFSRTY

CmoCh08G005100 (gene) of Cucurbita moschata (Rifu) v1 genome