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CmoCh08G005280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G005280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCmo_Chr08:3296355..3299570
RNA-Seq ExpressionCmoCh08G005280
SyntenyCmoCh08G005280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1795.16Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

XP_022933008.1 arabinogalactan peptide 23-like [Cucurbita moschata]7.4e-1690.32Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VA+YFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]1.0e-1796.77Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]5.1e-1793.55Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+YFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]4.0e-1485.48Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E   IACAALFAAA +TAVVASDESLSPAAAPGPSSAASAALPALGSL+GASLVSFVA+  N
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

TrEMBL top hitse value%identityAlignment
A0A6J1F3F5 arabinogalactan peptide 23-like3.6e-1690.32Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VA+YFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

A0A6J1H8I1 arabinogalactan peptide 23-like5.0e-1896.77Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

A0A6J1KUX3 RING-type E3 ubiquitin transferase2.8e-1395.35Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

A0A6J1KWK8 RING-type E3 ubiquitin transferase2.8e-1395.35Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

A0A6J1KX42 arabinogalactan peptide 23-like2.5e-1793.55Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+YFN
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

SwissProt top hitse value%identityAlignment
E0X9N4 Putative RING-type E3 ubiquitin transferase C3H694.1e-0965.12Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HA+ DGRLEEV LRH+  +DG T+IAK+IRLSDFL ++HI
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

Q5ZA07 E3 ubiquitin-protein ligase makorin4.8e-1072.09Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HA+RDGRLEEV LRH+   DG T+IAKNIRLSDFLS LH+
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

Q6IDS6 E3 ubiquitin-protein ligase makorin8.5e-0758.14Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HA+ DG LEEV LRH+G+Q+G T+I  +IRLS+FL  L I
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

Q8S2W4 Arabinogalactan protein 233.7e-1066.13Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIAC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGASLVS  ++Y +
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.5e-0860.32Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVAFYFN
        E  KIAC  +FAAA++TAV+A++     A APGP +S AS A+PALGSLVGASLVS  A+Y N
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVAFYFN

AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein6.0e-0858.14Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HA+ DG LEEV LRH+G+Q+G T+I  +IRLS+FL  L I
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

AT3G08505.2 zinc finger (CCCH-type/C3HC4-type RING finger) family protein6.0e-0858.14Show/hide
Query:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI
        F  HA+ DG LEEV LRH+G+Q+G T+I  +IRLS+FL  L I
Subjt:  FDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHI

AT3G57690.1 arabinogalactan protein 232.6e-1166.13Show/hide
Query:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN
        E  KIAC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGASLVS  ++Y +
Subjt:  EKWKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATTTGCACGCACATCGGGATGGCCGGTTGGAAGAGGTAGCACTGCGTCACATTGGGAATCAAGACGGCCTCACTATTATAGCTAAAAACATTAGGTTGTCGGA
CTTCCTTAGTGACTTGCATATCAGTCCTCAGTTAGGCTTGCAACGTCATCTAGGCGTTAGGAAATCAGTTATTAACAATTTAGTCCATGAAATGCCGAACTTTATGCCTT
GCATTAGTCTTGAGTTAGGCTTGTGCAATGTCAATGTGTCGAATTGCTTGCTGGAGTCCGATAATGAGAAATGGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACT
CTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGTAGCGCCGCCTCCGCCGCTCTTCCAGCCCTTGGATCGCTCGTCGGCGCCTC
GCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATTTGCACGCACATCGGGATGGCCGGTTGGAAGAGGTAGCACTGCGTCACATTGGGAATCAAGACGGCCTCACTATTATAGCTAAAAACATTAGGTTGTCGGA
CTTCCTTAGTGACTTGCATATCAGTCCTCAGTTAGGCTTGCAACGTCATCTAGGCGTTAGGAAATCAGTTATTAACAATTTAGTCCATGAAATGCCGAACTTTATGCCTT
GCATTAGTCTTGAGTTAGGCTTGTGCAATGTCAATGTGTCGAATTGCTTGCTGGAGTCCGATAATGAGAAATGGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACT
CTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGTAGCGCCGCCTCCGCCGCTCTTCCAGCCCTTGGATCGCTCGTCGGCGCCTC
GCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA
Protein sequenceShow/hide protein sequence
MFDLHAHRDGRLEEVALRHIGNQDGLTIIAKNIRLSDFLSDLHISPQLGLQRHLGVRKSVINNLVHEMPNFMPCISLELGLCNVNVSNCLLESDNEKWKIACAALFAAAT
LTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAFYFN