; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G005510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G005510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationCmo_Chr08:3393983..3395563
RNA-Seq ExpressionCmoCh08G005510
SyntenyCmoCh08G005510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593336.1 hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia]5.3e-5796.83Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

KAG7025683.1 hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5696.03Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSFSITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

XP_022959607.1 uncharacterized protein LOC111460632 [Cucurbita moschata]4.3e-59100Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIALAVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

XP_023004845.1 uncharacterized protein LOC111498025 [Cucurbita maxima]3.7e-5898.41Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKE+NDGSKVTGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

XP_023513743.1 uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo]5.3e-5797.62Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTK LKLRQRSFSITASNSSDGNSTKEK DGSKVTGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

TrEMBL top hitse value%identityAlignment
A0A6J1CV15 uncharacterized protein LOC1110150321.7e-3769.84Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MAS+FAAPPSQL L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGL+L QRSFSITASNSSDGNS KE     + TGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSL++W++SS+ T+LI L VKLI  K
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

A0A6J1GPL5 uncharacterized protein LOC1114559844.1e-3973.23Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFF
        MAS+F+APPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRSFSITASNSSDGNS KE+N  SK + DAQGPPFLTILAG F
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFF

Query:  VFSLVLWIVSSSVTTLIALAVKLISTK
        VFSL+LW++SS+ T+LI L VKLISTK
Subjt:  VFSLVLWIVSSSVTTLIALAVKLISTK

A0A6J1H506 uncharacterized protein LOC1114606322.1e-59100Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIALAVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

A0A6J1JUC2 uncharacterized protein LOC1114884366.5e-3771.43Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFF
        MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+L  RSFSITASNSSDGNS +E+N  SK + DAQGPPFLTILAG F
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFF

Query:  VFSLVLWIVSSSVTTLIALAVKLIST
        VFSL+LW++SS+ T+LI L VKLIST
Subjt:  VFSLVLWIVSSSVTTLIALAVKLIST

A0A6J1KVQ7 uncharacterized protein LOC1114980251.8e-5898.41Show/hide
Query:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV
        MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKE+NDGSKVTGDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALAVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALAVKLISTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTTCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCTTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCG
GAATGGCTTTCCAATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGAAATTGAGGCAGAGATCGTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCA
AGGAGAAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCC
TCTGTCACAACCCTTATAGCTCTAGCCGTCAAGTTGATCTCAACAAAGTAG
mRNA sequenceShow/hide mRNA sequence
CCGCATCTCGTGCGAACTCTCTCCTCTTCTGAAGTTAACGAAGTCATTGTACCAAGACTGGAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTTCTCT
CTTCTCACCGCCCAAGTTTGGATCACAAAGCTTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTACAAGAACACCAAA
GGATTGAAATTGAGGCAGAGATCGTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGG
TCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGCCGTCAAGTTGATCTCAA
CAAAGTAG
Protein sequenceShow/hide protein sequence
MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSS
SVTTLIALAVKLISTK