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CmoCh08G005580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G005580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein UPSTREAM OF FLC-like
Genome locationCmo_Chr08:3421602..3422177
RNA-Seq ExpressionCmoCh08G005580
SyntenyCmoCh08G005580
Gene Ontology termsGO:0051258 - protein polymerization (biological process)
GO:0005886 - plasma membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593343.1 hypothetical protein SDJN03_12819, partial [Cucurbita argyrosperma subsp. sororia]6.2e-1994.64Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES

KAG7025690.1 Protein UPSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-1994.64Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES

XP_022960426.1 protein UPSTREAM OF FLC-like [Cucurbita moschata]6.2e-1994.64Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES

XP_023004865.1 protein UPSTREAM OF FLC-like [Cucurbita maxima]8.9e-1891.07Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKT TTSTKSKST AKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES

XP_023514531.1 protein UPSTREAM OF FLC-like [Cucurbita pepo subsp. pepo]9.9e-1786.67Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS----TKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS    +KSKSTTAKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS----TKSKSTTAKSSDKELMES

TrEMBL top hitse value%identityAlignment
A0A1S3CEM9 protein UPSTREAM OF FLC isoform X31.8e-1166.67Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTK----TATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGK+F+PEKMHSHMKSC+G+KSLTK    T+  +T SKSTT  +SDK+L+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTK----TATTSTKSKSTTAKSSDKELMES

A0A6J1GPF9 uncharacterized protein LOC1114563259.3e-1376.36Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS---TKSKSTTAKSSDKE
        MAGPNCSLCGK+F+PEKMHSHMKSC+GL+SLTKTA+TS   T SKSTT  +SDK+
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS---TKSKSTTAKSSDKE

A0A6J1H7K3 protein UPSTREAM OF FLC-like3.0e-1994.64Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES

A0A6J1JS66 uncharacterized protein LOC1114884281.0e-1172.73Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS---TKSKSTTAKSSDKE
        +AGP+CSLCGK+F+PEKMHSHMKSC+GL+SLTKTA+TS   T SKSTT  +SDK+
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS---TKSKSTTAKSSDKE

A0A6J1KVT1 protein UPSTREAM OF FLC-like4.3e-1891.07Show/hide
Query:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES
        MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKT TTSTKSKST AKSSDKEL+ +
Subjt:  MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMES

SwissProt top hitse value%identityAlignment
Q9SYJ8 Protein SOSEKI 14.5e-0442.37Show/hide
Query:  PNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMESAQGIQG
        P CS CGK FKPEKMHSHMK C+G+K+      +S  +   T+ ++ K   +  + I G
Subjt:  PNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMESAQGIQG

Arabidopsis top hitse value%identityAlignment
AT1G05577.1 Domain of unknown function (DUF966)3.2e-0542.37Show/hide
Query:  PNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMESAQGIQG
        P CS CGK FKPEKMHSHMK C+G+K+      +S  +   T+ ++ K   +  + I G
Subjt:  PNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMESAQGIQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGACCGAACTGCTCGCTATGTGGGAAGAGTTTCAAGCCAGAGAAGATGCATTCACACATGAAATCGTGTAAGGGACTCAAGTCGCTGACCAAGACTGCTACGAC
ATCGACGAAGTCAAAGTCAACCACAGCAAAATCTTCGGACAAGGAACTGATGGAATCAGCTCAAGGAATTCAAGGTTGCGTGTGCTTTAAGACTGCTCTGCCAATGGAAT
GGACCAGCGCTAACTTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGACCGAACTGCTCGCTATGTGGGAAGAGTTTCAAGCCAGAGAAGATGCATTCACACATGAAATCGTGTAAGGGACTCAAGTCGCTGACCAAGACTGCTACGAC
ATCGACGAAGTCAAAGTCAACCACAGCAAAATCTTCGGACAAGGAACTGATGGAATCAGCTCAAGGAATTCAAGGTTGCGTGTGCTTTAAGACTGCTCTGCCAATGGAAT
GGACCAGCGCTAACTTGCTTTGA
Protein sequenceShow/hide protein sequence
MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTSTKSKSTTAKSSDKELMESAQGIQGCVCFKTALPMEWTSANLL