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CmoCh08G005680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G005680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNuclear pore complex protein
Genome locationCmo_Chr08:3495541..3498513
RNA-Seq ExpressionCmoCh08G005680
SyntenyCmoCh08G005680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058686.1 uncharacterized protein E6C27_scaffold339G001560 [Cucumis melo var. makuwa]2.1e-3787.76Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVS+RVRARK G GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+  QPKRKQR FWRVSVWSNHAAAAAAA S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
KAG6593352.1 hypothetical protein SDJN03_12828, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4595.92Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHAS
        MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWSNH    AAAPSCYSATHAS
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHAS
KGN45194.1 hypothetical protein Csa_015637 [Cucumis sativus]3.1e-3685.71Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVSARVRARK G GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+  QPKRKQR FWRVSVWSNHAAAA    S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
XP_022143553.1 uncharacterized protein LOC111013423 [Momordica charantia]3.6e-3786.73Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVSARVRARKNG GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+G QPKRKQR FWRVSVWSNHAAAA    S ++ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
XP_038900267.1 uncharacterized protein LOC120087349 [Benincasa hispida]4.7e-3786.73Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVSARVRARK+G GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+G QPKRKQR FWRVSVWSNHAAAA    S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
TrEMBL top hitse value%identityAlignment
A0A0A0K8I7 Uncharacterized protein1.5e-3685.71Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVSARVRARK G GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+  QPKRKQR FWRVSVWSNHAAAA    S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
A0A1S4E346 uncharacterized protein LOC1079917963.3e-3684.69Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVS+RVRARK G GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+  QPKRKQR FWRVSVWSNHAAAA    S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
A0A5A7UWX2 Uncharacterized protein1.0e-3787.76Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVS+RVRARK G GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+  QPKRKQR FWRVSVWSNHAAAAAAA S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
A0A6J1CR01 uncharacterized protein LOC1110134231.7e-3786.73Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWLAVSARVRARKNG GLL KLHDDVETCGYEDVKVMWEMLRRSESEL+G QPKRKQR FWRVSVWSNHAAAA    S ++ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
A0A6J1JS76 uncharacterized protein LOC1114884373.6e-3582.65Show/hide
Query:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
        MELWHKM+FPVRRVWL VSARVRARK+G GLL KLHDDVETCGYEDVKVMWE+LRRSESEL+G +PKRK R FWRVSVWSNHAAAA    S Y+ATHA
Subjt:  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLG-QPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G43150.1 unknown protein9.9e-0935.9Show/hide
Query:  ELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWS
        E W+ M FP RR+W   + RV  R +G   L +L  DV +C YED+ +MW +L ++E +L   P ++Q+   +   W+
Subjt:  ELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGAGGTGGGCTTTTGAAGAAGCTCCATGA
TGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTCGGTCAACCAAAACGCAAGCAGCGCCTATTCTGGA
GAGTTTCTGTGTGGTCCAACCATGCTGCTGCTGCTGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGA
mRNA sequenceShow/hide mRNA sequence
TACGTAGGCAACCGGTCCCGTGTCGGTGGCCTCGATTTCAGATATAAAATCGACGGCCGATTTGGTTCTCTATAATTGGCGCTTCCCGTTTTCAATTTGTTTCCCTTCAA
CCTTATTTCATCTTCCATTTCGTTGCTCTGTTTCTCTCTCTCTCTCTCGCTCTGCAATCTCTCTAGCCAAGAGCACTGGAAGAACCGGGAGTGAAAGGAGAGGGGCAGTT
CTGGCCGGACTAAGTACCATAGCCGTTCGACTCGGCGGCTGTGGAGGCGGATTTTGGTACCGGAGGAAAAAGAAGAGGCGGAGCCAGAGCAGGACCAAAGTTAAGCTTCG
GTTTATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGAGGTGGGCTTTTGAAGAAGCTCC
ATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTCGGTCAACCAAAACGCAAGCAGCGCCTATTC
TGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCTGCTGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGAGCCCATCAAATCAACAACTCTACTCTCAC
TTCAGCTCAGCTCAGCTTAACAGCCAATGCTCGCAATGGCACAGAACTCTTTACCAAACTTGTTCAAAGAAATGTGAAGTCTTTGCACACGCAGTTAATCTCTTCCACTT
TGAGCAGAAAAAACACCCTTTTGTAAGTATTAATAATTTTTTTTGGTTTGTAGCTAAGAATCGTTTGTGAATCATCGATGATGCTGGATTGGATGCATCTCCATGAAAAT
CAATCGAAAACCAATCATAAATTCAACCTTAATTGAACTTTATAATGTTAAATTTTTCGATGTTTTTCAATACGTGGAGGAGATCCAAACATCCTATCGATTTCTTTCTT
AAAATGTTTTGAAGTTATTATCATACTTTAAGCATTATTGCTACTTTTGTGGTATTATTGTAAGGTTTGATGTAACATAAGATTGATACTAAGACATTATTGACACAAAG
CAGGAGACATGATTGGGA
Protein sequenceShow/hide protein sequence
MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHAS