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CmoCh08G005800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G005800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 1, chloroplastic
Genome locationCmo_Chr08:3550981..3552129
RNA-Seq ExpressionCmoCh08G005800
SyntenyCmoCh08G005800
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
InterPro domainsIPR044983 - Photosynthetic NDH subunit of subcomplex B 1, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058709.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa]1.4e-1288.89Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

KAG7025711.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3468.25Show/hide
Query:  MKLTNQFEIYHKFLFCECLTTLVSLLLIFISRGSLPVLAFSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQ
        MKLTNQFEIY                                      +YYGMVLSTKLAGLGHAVFL MTAARDRVSYVYLDVNAAGAGLFLVSKHLNQ
Subjt:  MKLTNQFEIYHKFLFCECLTTLVSLLLIFISRGSLPVLAFSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQ

Query:  MPLIFDAFKAHFLDLGTMRPYRSLLR
        MPLIFDAFKAHFLDLGTMRPYRSLLR
Subjt:  MPLIFDAFKAHFLDLGTMRPYRSLLR

MCI01734.1 hypothetical protein [Trifolium medium]6.1e-1352.87Show/hide
Query:  FSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA--FKAHFLDLGTMRPYRSL
        F   +M  +RYY MVLSTKLAG+GHA +LFMT ARDRVSYVY +VNAAGAGLFL        P + +      H ++    RP+RS+
Subjt:  FSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA--FKAHFLDLGTMRPYRSL

XP_004136098.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus]8.0e-1391.11Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAGLGHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

XP_038896546.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]8.0e-1391.11Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAGLGHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

TrEMBL top hitse value%identityAlignment
A0A0A0K6S9 Uncharacterized protein3.9e-1391.11Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAGLGHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

A0A1S3CEK1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic6.6e-1388.89Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

A0A392NQR7 Uncharacterized protein (Fragment)3.0e-1352.87Show/hide
Query:  FSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA--FKAHFLDLGTMRPYRSL
        F   +M  +RYY MVLSTKLAG+GHA +LFMT ARDRVSYVY +VNAAGAGLFL        P + +      H ++    RP+RS+
Subjt:  FSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA--FKAHFLDLGTMRPYRSL

A0A5A7UYW0 Photosynthetic NDH subunit of subcomplex B 16.6e-1388.89Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

A0A6J1CV27 photosynthetic NDH subunit of subcomplex B 1, chloroplastic8.6e-1388.89Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL
        RYY MVLSTKLAG+GHAVFLFMT ARDRVSY+Y DVNAAGAGLFL
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL

SwissProt top hitse value%identityAlignment
Q9S9N6 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic3.4e-1456.1Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR
        RYY MVLSTKLAGLGHA FLFMT ARDRVSY+Y +VN+AGAGL L     +++ N   L +  +      LG  RP+RS+ R
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

Arabidopsis top hitse value%identityAlignment
AT1G15980.1 NDH-dependent cyclic electron flow 12.4e-1556.1Show/hide
Query:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR
        RYY MVLSTKLAGLGHA FLFMT ARDRVSY+Y +VN+AGAGL L     +++ N   L +  +      LG  RP+RS+ R
Subjt:  RYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTCACCAATCAGTTCGAGATCTACCATAAATTTCTCTTTTGTGAATGCCTGACCACTCTCGTTTCTTTACTGCTAATTTTCATCTCGAGGGGATCGTTACCTGT
GCTTGCATTTTCCCACGACGTTATGACTCATGACAGGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTTATGACAGCAGCCA
GAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCT
CATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTCACCAATCAGTTCGAGATCTACCATAAATTTCTCTTTTGTGAATGCCTGACCACTCTCGTTTCTTTACTGCTAATTTTCATCTCGAGGGGATCGTTACCTGT
GCTTGCATTTTCCCACGACGTTATGACTCATGACAGGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTTATGACAGCAGCCA
GAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCT
CATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG
Protein sequenceShow/hide protein sequence
MKLTNQFEIYHKFLFCECLTTLVSLLLIFISRGSLPVLAFSHDVMTHDRYYGMVLSTKLAGLGHAVFLFMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKA
HFLDLGTMRPYRSLLR