CuGenDBv2

Gene ID	CmoCh08G005870
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	Cmo_Chr08:3579784..3581259
RNA-Seq Expression	CmoCh08G005870
Synteny	CmoCh08G005870
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ADT64970.1 photosystem II CP43 protein, partial [Andreaea rupestris]

3.1e-24

78.95

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Query:  PSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRG--GLLVF
        P+A+S FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR   G ++F
Subjt:  PSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRG--GLLVF

AOW68684.1 photosystem II CP43 chlorophyll apoprotein [Intsia bijuga]

4.1e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQTFTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

KAF4396247.1 hypothetical protein F8388_019793 [Cannabis sativa]

2.4e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAYL EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

QTT78459.1 photosystem II 44 kDa protein [Andreaea rupestris var. fauriei]

3.1e-24

78.95

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Query:  PSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRG--GLLVF
        P+A+S FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR   G ++F
Subjt:  PSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRG--GLLVF

YP_009766167.1 photosystem II 44 kDa protein [Afzelia quanzensis]

4.1e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQTFTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

TrEMBL top hits

e value

%identity

Alignment

A0A1D8R983 Photosystem II CP43 reaction center protein

2.0e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQTFTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

A0A1D8R9E2 Photosystem II CP43 reaction center protein

2.0e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQTFTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

A0A6H0E4Y9 Photosystem II CP43 reaction center protein

2.0e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQTFTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

A0A7J6HLV4 Uncharacterized protein

1.2e-24

89.39

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAYL EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

F6JSY9 Photosystem II CP43 reaction center protein (Fragment)

1.5e-24

78.95

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Query:  PSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRG--GLLVF
        P+A+S FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR   G ++F
Subjt:  PSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRG--GLLVF

SwissProt top hits

e value

%identity

Alignment

A1E9Z4 Photosystem II CP43 reaction center protein

1.6e-26

86.57

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Query:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        +ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

B3TNB9 Photosystem II CP43 reaction center protein

1.6e-26

86.57

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Query:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        +ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

P10804 Photosystem II CP43 reaction center protein

1.2e-26

86.57

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Query:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        +ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

Q0G9W6 Photosystem II CP43 reaction center protein

1.6e-26

86.57

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Query:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        +ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

Q70Y07 Photosystem II CP43 reaction center protein

1.6e-26

87.88

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Query:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        ALS FGFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  ALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

9.4e-27

85.07

Show/hide

Query:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR
        +ALS  GFI  CFVWFNNTAY  EFY PTGPEASQAQ FTFLVRDQRLGANVGSAQ PTGLGKYLMR
Subjt:  SALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMR

Sequences

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CDS sequence

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ATGACTTTTATCTTCCTACATTTCAGAAAAGTGGGTCCAGTGTCGGAATCTGCTGTGAAGTGCATACACACTGAGATGTCAAGCACTGAATTATCACTACCAAGTGCTTT
ATCCTTTTTTGGTTTTATTCCTTATTGTTTTGTCTGGTTCAATAACACTGCTTATTTGCGTGAGTTTTACGTGCCGACTGGACCCGAAGCTTCTCAAGCTCAAACATTTA
CGTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGAACCTACTGGTTTAGGTAAATATCTAATGCGTGGTGGTTTGTTAGTTTTCTACTTTGAC
ATACCATATTTCTAG

mRNA sequence

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CGCATTTTAAAAACTCGGAGGGAAATCCCAAAGAAGACAATATCTACTAGTGGTGGGCTTGGACCGTTACATTTATCCTTCCGACTCTTTTTACCTTTTCCCATCAAGAT
AAAGGACGGTGGGGTTACGGGTTAATATAATATCAAATTGGCCAGGACCTCAGAAATCATTAAGATGGCATTATTAACAAGCACATGACTTTTATCTTCCTACATTTCAG
AAAAGTGGGTCCAGTGTCGGAATCTGCTGTGAAGTGCATACACACTGAGATGTCAAGCACTGAATTATCACTACCAAGTGCTTTATCCTTTTTTGGTTTTATTCCTTATT
GTTTTGTCTGGTTCAATAACACTGCTTATTTGCGTGAGTTTTACGTGCCGACTGGACCCGAAGCTTCTCAAGCTCAAACATTTACGTTTCTAGTTAGAGACCAACGTCTT
GGAGCTAACGTTGGATCCGCTCAAGAACCTACTGGTTTAGGTAAATATCTAATGCGTGGTGGTTTGTTAGTTTTCTACTTTGACATACCATATTTCTAG

Protein sequence

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MTFIFLHFRKVGPVSESAVKCIHTEMSSTELSLPSALSFFGFIPYCFVWFNNTAYLREFYVPTGPEASQAQTFTFLVRDQRLGANVGSAQEPTGLGKYLMRGGLLVFYFD
IPYF

CmoCh08G005870 (gene) of Cucurbita moschata (Rifu) v1 genome