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CmoCh08G006070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G006070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSodium channel protein type 10 subunit alpha like
Genome locationCmo_Chr08:3688489..3691090
RNA-Seq ExpressionCmoCh08G006070
SyntenyCmoCh08G006070
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593392.1 hypothetical protein SDJN03_12868, partial [Cucurbita argyrosperma subsp. sororia]1.9e-6599.24Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNP AKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_022145821.1 uncharacterized protein LOC111015178 [Momordica charantia]3.1e-4478.15Show/hide
Query:  YHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFF
        YH + ++TA  IA+PL S F  PPEI FS  H RRSSLLLSSNP A SA C+AAVRPPPDS PPPD+DPIR KGFPA FSKF DRVQIFFAVLFWMSLFF
Subjt:  YHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFF

Query:  WTSALDGKNRPNKGSRFRR
        WTS LDGKNRPNKGSRFRR
Subjt:  WTSALDGKNRPNKGSRFRR

XP_022959617.1 uncharacterized protein LOC111460643 isoform X1 [Cucurbita moschata]2.2e-66100Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_023004358.1 uncharacterized protein LOC111497700 isoform X1 [Cucurbita maxima]2.3e-6396.95Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MA+PSLSTSNALYHPSRAVTAPAIAIPLFSSFHA PEISFSPLHHRRSSLLLS NP AKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_023513765.1 uncharacterized protein LOC111778275 isoform X1 [Cucurbita pepo subsp. pepo]1.8e-6396.95Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MA+PSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNP AKSAVC AAVRPPPDSDPPPDEDPIRLKGF AIFSKFGDRVQI
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

TrEMBL top hitse value%identityAlignment
A0A0A0K8T0 Uncharacterized protein5.6e-3971.77Show/hide
Query:  SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRR-SSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFW
        S +L+  S++V A +IA+PL S+FH   EI FS LH RR S L  SSN  A+S VC+AAVRPPPDSDPPP+EDP+RL G PAIFSKF DRVQIF AVLFW
Subjt:  SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRR-SSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFW

Query:  MSLFFWTSALDGKNRPNKGSRFRR
        MSLFFWTSALDG+NRPNKGSRFRR
Subjt:  MSLFFWTSALDGKNRPNKGSRFRR

A0A1S3CE06 uncharacterized protein LOC1034997983.9e-4071.54Show/hide
Query:  SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWM
        S +L+  S +V A +IA+PL S+FH   +I FSP   R S L  SSN  AKS VC+AAVRPPPDSDPPP+EDP+RL G PAIFSKF DRVQIF AVLFWM
Subjt:  SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWM

Query:  SLFFWTSALDGKNRPNKGSRFRR
        SLFFWTSALDGKNRPNKGSRFRR
Subjt:  SLFFWTSALDGKNRPNKGSRFRR

A0A6J1CXJ1 uncharacterized protein LOC1110151781.5e-4478.15Show/hide
Query:  YHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFF
        YH + ++TA  IA+PL S F  PPEI FS  H RRSSLLLSSNP A SA C+AAVRPPPDS PPPD+DPIR KGFPA FSKF DRVQIFFAVLFWMSLFF
Subjt:  YHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFF

Query:  WTSALDGKNRPNKGSRFRR
        WTS LDGKNRPNKGSRFRR
Subjt:  WTSALDGKNRPNKGSRFRR

A0A6J1H516 uncharacterized protein LOC111460643 isoform X11.1e-66100Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

A0A6J1KZ93 uncharacterized protein LOC111497700 isoform X11.1e-6396.95Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MA+PSLSTSNALYHPSRAVTAPAIAIPLFSSFHA PEISFSPLHHRRSSLLLS NP AKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  FFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52550.1 unknown protein6.3e-1135.34Show/hide
Query:  APSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFF
        A + S+SN   H  R    P  +   FS F +      SPL  +   L+ +  P  + AV       PP  DPPP ++   L     + S   DRV+IF 
Subjt:  APSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFF

Query:  AVLFWMSLFFWTSALDGK-----NRPNKGSRFR
        +VL W+SLFFW SAL G+      +  KGSRF+
Subjt:  AVLFWMSLFFWTSALDGK-----NRPNKGSRFR

AT3G15780.1 unknown protein7.2e-1537.88Show/hide
Query:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI
        MA  + +TS  LYH S           + S F  P  +      HRR+++LL+S  R +          PP  DPPP ED  +L+G     ++  DRV+I
Subjt:  MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQI

Query:  FFAVLFWMSLFFWTSALD--GKNRPNKGSRFR
        F AV FWM LFFW +  D  GK +  KGSRF+
Subjt:  FFAVLFWMSLFFWTSALD--GKNRPNKGSRFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACCGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCCTCCGGA
AATTTCCTTCTCTCCGCTTCATCATCGCCGTTCATCTCTCTTGCTCTCTTCTAATCCCCGTGCTAAATCCGCCGTTTGTACAGCAGCAGTACGCCCGCCTCCGGACTCCG
ATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTC
TTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAG
mRNA sequenceShow/hide mRNA sequence
TAGTCGACTTTTCTCTCCTCACAATGGCAGCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACCGCCCCCGCAATCGCCATTCCTCTCTTC
TCAAGCTTCCATGCTCCTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGCCGTTCATCTCTCTTGCTCTCTTCTAATCCCCGTGCTAAATCCGCCGTTTGTACAGCAGC
AGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTG
CTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAGGCTATGCAAGTGCACATCATC
CTCGTATTGGGTCATGCCAATTTTCTTTGTTTCGTTTCAACTTCTCCGATGCCTCTAGAGTGACAACGACCAATCTTTTTCACTAATAAGTTCCAATTTTGTATAGATTG
TTCTGGTAGGTGTTTTCTTTGACAGGGATTTGGTTGATGGATGTACAAGATTGTCTACGAGGGTTGCAGTTGAAACATTTGGAATAATTAGAAGTCTTTGCCACAACCTG
GTTGACACATTGCCCGTAGTTATACGTATGGCTAGAATTTATTTTTGCATTAAATAAATTTTAAAAGTAGTGGTCAAATTGTATTTTGCTAGGTTTCTGAGAAGCTCAAA
GTACTTGAGCTTTTA
Protein sequenceShow/hide protein sequence
MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPRAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSL
FFWTSALDGKNRPNKGSRFRR