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CmoCh08G006260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G006260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHistone H2A
Genome locationCmo_Chr08:3816069..3816514
RNA-Seq ExpressionCmoCh08G006260
SyntenyCmoCh08G006260
Gene Ontology termsGO:0009266 - response to temperature stimulus (biological process)
GO:0031507 - heterochromatin assembly (biological process)
GO:0044030 - regulation of DNA methylation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135834.1 probable histone H2A variant 3 isoform X2 [Cucumis sativus]7.2e-0897.22Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
XP_007202745.1 probable histone H2A variant 3 [Prunus persica]1.0e-0694.59Show/hide
Query:  MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASN NKDKDKKKP+SRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQ
XP_010033915.1 probable histone H2A variant 3 [Eucalyptus grandis]1.2e-0797.22Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
XP_022152569.1 probable histone H2A variant 3 [Momordica charantia]3.2e-08100Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
XP_022953233.1 probable histone H2A variant 3 [Cucurbita moschata]3.2e-08100Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
TrEMBL top hitse value%identityAlignment
A0A0A0K6F6 Histone H2A3.5e-0897.22Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
A0A5D3CH66 Histone H2A3.5e-0897.22Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
A0A6J1DGE3 Histone H2A1.6e-08100Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
A0A6J1GMV1 Histone H2A1.6e-08100Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
A0A6J1JQN2 Histone H2A1.6e-08100Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
SwissProt top hitse value%identityAlignment
O23628 Histone H2A variant 11.3e-0463.16Show/hide
Query:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
        M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+Q
Subjt:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
Q9C944 Probable histone H2A variant 34.4e-0880.56Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
Arabidopsis top hitse value%identityAlignment
AT1G52740.1 histone H2A protein 93.1e-0980.56Show/hide
Query:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
        MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQ
Subjt:  MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQ
AT2G38810.1 histone H2A 88.7e-0460.53Show/hide
Query:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
        M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+Q
Subjt:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
AT2G38810.2 histone H2A 88.7e-0460.53Show/hide
Query:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
        M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+Q
Subjt:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
AT2G38810.3 histone H2A 88.7e-0460.53Show/hide
Query:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
        M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+Q
Subjt:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
AT3G54560.1 histone H2A 119.3e-0663.16Show/hide
Query:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ
        M+GKG KGL+  K  +A+ +KDKDKKKP+SRS+RAG+Q
Subjt:  MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGT
CTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCAC
AAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTG
CTTATTGGAGCTGTAAGCGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGT
CTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCAC
AAATTTTCTTACTTAGATGCGTTTCAAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATAACTTGATGAGTTCGTTTTCTTCATGGGCTGTG
CTTATTGGAGCTGTAAGCGTGTGA
Protein sequenceShow/hide protein sequence
MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQVSLFLYTSPLVFLPSFCVSSVDLCSFEVYAGFHFRNPQIFLLRCVSRWVLFFHLRVLFSCLLNNLMSSFSSWAV
LIGAVSV