CuGenDBv2

Gene ID	CmoCh08G006590
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent RNA helicase DDX11
Genome location	Cmo_Chr08:4275380..4275958
RNA-Seq Expression	CmoCh08G006590
Synteny	CmoCh08G006590
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593457.1 hypothetical protein SDJN03_12933, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-99

96.92

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Query:  MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKA
        MLLKET+HKTLENFKHLFFKGFQKLQKPTSFLLFPC KGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGS+RTSKENMK   EQGLPRIRQEKA
Subjt:  MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKA

Query:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
        VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
Subjt:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

XP_016902859.1 PREDICTED: uncharacterized protein LOC107991904 [Cucumis melo]

2.1e-73

74.27

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLKET+       HKTLE+FK LFFKGFQKLQKPTS + F C KG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GSV  SKEN+K+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+SMN
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

XP_022155064.1 uncharacterized protein LOC111022197 [Momordica charantia]

1.8e-72

74.76

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLK T+       HKTLENFK+LF +GFQKLQKPTS   F CRKGNP   HTHPT+R+YIDFYDEWQSTLHKAAKRSID GS  TSK NMK+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  P+ RQEKAVKEKKK G +H RKGD+K+ S R +GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMDIHSEFSVPE SA S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

XP_023000396.1 uncharacterized protein LOC111494654 [Cucurbita maxima]

2.1e-97

95.38

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Query:  MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKA
        MLL+ET+HKTLENFKHLFFKGFQKLQKPTSFLLFPC KGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKEN K   EQGLPRIRQEKA
Subjt:  MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKA

Query:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
        V EKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
Subjt:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

XP_038900276.1 uncharacterized protein LOC120087356 [Benincasa hispida]

3.2e-74

74.76

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLKET+       HKTLENFK  FFKGFQKLQKPTS + F C KG PQ QHTHPT+R+YIDFYDEWQSTL KAAKRS+D G+V TSKEN+K+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR RQEK VKEKKK G +H RKGDVK+ S RS+GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE S +S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRRL
Subjt:  SSKRRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAF5 Uncharacterized protein

2.5e-72

72.82

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLK+T+       HKTLENFK+LFFKGFQKLQKPTS +   C KG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GS+  SKEN+K+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A1S4E3Q5 uncharacterized protein LOC107991904

1.0e-73

74.27

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLKET+       HKTLE+FK LFFKGFQKLQKPTS + F C KG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GSV  SKEN+K+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+SMN
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A5D3BXY4 Putative ATP-dependent RNA helicase DDX11

1.0e-73

74.27

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLKET+       HKTLE+FK LFFKGFQKLQKPTS + F C KG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GSV  SKEN+K+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+SMN
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A6J1DP45 uncharacterized protein LOC111022197

8.6e-73

74.76

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Query:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------
        MLLK T+       HKTLENFK+LF +GFQKLQKPTS   F CRKGNP   HTHPT+R+YIDFYDEWQSTLHKAAKRSID GS  TSK NMK+       
Subjt:  MLLKETV-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKE-------

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  P+ RQEKAVKEKKK G +H RKGD+K+ S R +GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMDIHSEFSVPE SA S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A6J1KFS0 uncharacterized protein LOC111494654

1.0e-97

95.38

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Query:  MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKA
        MLL+ET+HKTLENFKHLFFKGFQKLQKPTSFLLFPC KGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKEN K   EQGLPRIRQEKA
Subjt:  MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMK---EQGLPRIRQEKA

Query:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
        V EKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
Subjt:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G15260.1 unknown protein

4.0e-14

44.79

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Query:  KKKQGNTHFRK-----GDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR
        +K   N H +K        +   +R D L QKMK+L M+D  D++  LD+ EA+  YS +RSPVYL+IVD FF D++ EFS P  SAK +N S+R+
Subjt:  KKKQGNTHFRK-----GDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR

AT3G16070.1 unknown protein

4.5e-13

32.93

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Query:  HKTLENFKHLFFKGFQKLQKP-TSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKEQGLPRIRQEKAVKEKKKQGN
        H+TL + K +  +  +KL +P T F    CR       ++   + IY  F + W+S L                 EN  E  L   + E  V+E+++   
Subjt:  HKTLENFKHLFFKGFQKLQKP-TSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKEQGLPRIRQEKAVKEKKKQGN

Query:  THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHS
            +      SR  D + +K+ E+ M +  D+EQ LD+EEA+HYYSR+ SPVYL IVD+FF D++S
Subjt:  THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHS

AT3G24535.1 unknown protein

5.8e-05

34.78

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Query:  KMKELEMLDRGDMEQE----LDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR
        K+KE+E +   D+  +     D+ E +H YSRLR   YL++V+ FFM+++S+F  P     +  + +RR
Subjt:  KMKELEMLDRGDMEQE----LDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTGCTAAAAGAAACCGTCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAG
AAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACA
GAGGCAGTGTGAGAACATCCAAGGAAAACATGAAGGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGA
AAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAGTTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGA
AGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCTAAGA
GTATGAACAGCTCAAAGAGGAGGTTATAG

mRNA sequence

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Protein sequence

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MLLKETVHKTLENFKHLFFKGFQKLQKPTSFLLFPCRKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSVRTSKENMKEQGLPRIRQEKAVKEKKKQGNTHFR
KGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

CmoCh08G006590 (gene) of Cucurbita moschata (Rifu) v1 genome