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CmoCh08G006690 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G006690
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTCP domain-containing protein
Genome locationCmo_Chr08:4304653..4307604
RNA-Seq ExpressionCmoCh08G006690
SyntenyCmoCh08G006690
Gene Ontology termsGO:0065007 - biological regulation (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7822241.1 U3 small nucleolar RNA-associated protein 18-like protein [Senna tora]1.2e-0757.69Show/hide
Query:  SATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGK--VSIKLASAPILVIGVERMNPELEEIEALFKLFFE
        S TSSVNTSGV VT IPFS H  KSI S+PTLKL  IS+ GK  +S   ASA +    +E + PE EE+EAL KL  E
Subjt:  SATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGK--VSIKLASAPILVIGVERMNPELEEIEALFKLFFE

KAF7843354.1 dynein light chain 1, cytoplasmic-like [Senna tora]1.2e-1243.52Show/hide
Query:  IALTNPPRNRNGQTNCGIGDIIGQHIGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQISVGAGTGTDDYCSDRLRVLLKVIGVERMNPELEEIE
        + LT PP+    QT   IGD+I Q I  I +PN LL T  Q+N + S+TE R D +  Q VD++ VGAG G  D  +D + V+L+ +   R+ PE EE+E
Subjt:  IALTNPPRNRNGQTNCGIGDIIGQHIGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQISVGAGTGTDDYCSDRLRVLLKVIGVERMNPELEEIE

Query:  ALFKLFFE
        AL +L  E
Subjt:  ALFKLFFE

KAG2379829.1 Rop guanine nucleotide exchange factor [Vigna angularis]6.7e-1133.33Show/hide
Query:  RAYLRSQSKIAFGPRSTPDEPIALTNPPRNRNGQTNCGIGDIIGQHIGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQISVGAGTGTDDYCSDR
        +A L  Q  +   P + PD+ I L + P +   Q N  + D++GQH  R+ + N LL     +N + SH EAR+D Q RQ +DQ  + A     D+ +DR
Subjt:  RAYLRSQSKIAFGPRSTPDEPIALTNPPRNRNGQTNCGIGDIIGQHIGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQISVGAGTGTDDYCSDR

Query:  LRVLLKVIGVERMNPELEEIEALFKLFFE
          VL + +   R+ P  E++ AL +L  +
Subjt:  LRVLLKVIGVERMNPELEEIEALFKLFFE

KAG7025805.1 hypothetical protein SDJN02_12303, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-32100Show/hide
Query:  MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGVERMNPELEEIEALFKLFFE
        MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGVERMNPELEEIEALFKLFFE
Subjt:  MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGVERMNPELEEIEALFKLFFE

PLY83525.1 hypothetical protein LSAT_8X122100 [Lactuca sativa]1.8e-0853.93Show/hide
Query:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI-GVERMNPELEEIEALFKLFFEGSKKFQR
        +PIA SATSSVNTSGVLVTLIPF     KS LS+PTLKL TIS AG  SI   SAP L      R+ PE    ++ F   F   K+ +R
Subjt:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI-GVERMNPELEEIEALFKLFFEGSKKFQR

TrEMBL top hitse value%identityAlignment
A0A2J6KSN2 TCP domain-containing protein1.7e-0748.91Show/hide
Query:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI-GVERMNPELEEIEALFKLFFEGSKKFQRTAT
        +PIA SATSSVNTSGVLVTLIPF     KS  S+PTLKL TI  AG  SI   SAP L      R+ P+    ++ F   F   K+ +R ++
Subjt:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI-GVERMNPELEEIEALFKLFFEGSKKFQRTAT

A0A2J6L866 TCP domain-containing protein8.9e-0953.93Show/hide
Query:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI-GVERMNPELEEIEALFKLFFEGSKKFQR
        +PIA SATSSVNTSGVLVTLIPF     KS LS+PTLKL TIS AG  SI   SAP L      R+ PE    ++ F   F   K+ +R
Subjt:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI-GVERMNPELEEIEALFKLFFEGSKKFQR

A0A2P2NPS4 Uncharacterized protein1.3e-0766.67Show/hide
Query:  AASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI
        + SATSSV T GVLVTLIPFS HF KSILS+PTL++AT S  G+ SI    APILV+
Subjt:  AASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI

A0A6S7MV07 TCP domain-containing protein1.8e-0657.97Show/hide
Query:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGV-ERMNPE
        +PIA  ATSSV+TSGVL+TLIPF     +S LS+PTLKL TIS AG  SI   SAP L   +  R+ PE
Subjt:  SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGV-ERMNPE

C4JC74 Uncharacterized protein7.8e-0520.28Show/hide
Query:  SQTTIKQRGDELRFIDVSASSNVDKKATWPQCIDYFSIDNVDICVIYRIPSHQIISA---------ISPLYLSTNKCRAYLRSQSKIAFG----------
        ++  I +R DEL  +DV A+ NVD+ A   + +D+ +  +    ++ R   H+ I+          I  + +    C   +  ++  AF           
Subjt:  SQTTIKQRGDELRFIDVSASSNVDKKATWPQCIDYFSIDNVDICVIYRIPSHQIISA---------ISPLYLSTNKCRAYLRSQSKIAFG----------

Query:  -----------------------PRSTPDEPIALTNPPRNRNGQTNCGIGDIIGQHIGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQ--ISVG
                               P+   D  + + +P  + +G+++  + D++G+H+G +G+P+P L    +++ V +   AR D + R+ VD+  ++  
Subjt:  -----------------------PRSTPDEPIALTNPPRNRNGQTNCGIGDIIGQHIGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQ--ISVG

Query:  AGTGTDDYCSDR
        A    +D+ +DR
Subjt:  AGTGTDDYCSDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCC
CACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGA
TTGAAGCGTTGTTCAAGCTGTTTTTCGAGGGCAGCAAAAAGTTCCAGCGCACTGCAACAATTCACGGAGCAATTTTGAAATTTAGTTGTTCCTGCCCCAGCCAAACGACC
ATCAAGCAGCGCGGAGACGAGCTCAGATTCATCGACGTGAGCGCCTCGTCCAACGTTGATAAGAAAGCCACTTGGCCCCAATGCATCGATTACTTCTCGATTGATAATGT
GGATATTTGTGTAATTTATCGTATTCCCAGCCATCAAATAATCAGCGCAATCTCTCCTCTGTATTTATCCACAAACAAATGCAGAGCGTACCTTCGTTCCCAATCCAAAA
TCGCCTTTGGTCCACGATCCACTCCGGACGAACCGATCGCACTCACAAATCCTCCTCGAAACCGCAATGGCCAGACCAATTGCGGCATCGGCGACATCATCGGTCAACAC
ATCGGGCGTATTGGTAACCCTAATCCCCTTCTCCACACATTTCGCCAAATCAATTTTGTCGATTCCCACACTGAAGCTCGCTACGACTTCCAAAGCCGGCAAAGCGTCGA
TCAAATTAGCGTCGGCGCCGGAACTGGAACTGACGACTACTGCTCTGATCGATTGCGCGTTTTGCTGAAGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGA
TTGAAGCGTTGTTCAAGCTGTTTTTCGAGGGCACCAAAAAAGCTTCGGCGGATTGCAGTAATTTTCTGAAATATGAGAGCTCTTTGGGGATTTTGCTTTGTGGTTTTGTT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCC
CACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGA
TTGAAGCGTTGTTCAAGCTGTTTTTCGAGGGCAGCAAAAAGTTCCAGCGCACTGCAACAATTCACGGAGCAATTTTGAAATTTAGTTGTTCCTGCCCCAGCCAAACGACC
ATCAAGCAGCGCGGAGACGAGCTCAGATTCATCGACGTGAGCGCCTCGTCCAACGTTGATAAGAAAGCCACTTGGCCCCAATGCATCGATTACTTCTCGATTGATAATGT
GGATATTTGTGTAATTTATCGTATTCCCAGCCATCAAATAATCAGCGCAATCTCTCCTCTGTATTTATCCACAAACAAATGCAGAGCGTACCTTCGTTCCCAATCCAAAA
TCGCCTTTGGTCCACGATCCACTCCGGACGAACCGATCGCACTCACAAATCCTCCTCGAAACCGCAATGGCCAGACCAATTGCGGCATCGGCGACATCATCGGTCAACAC
ATCGGGCGTATTGGTAACCCTAATCCCCTTCTCCACACATTTCGCCAAATCAATTTTGTCGATTCCCACACTGAAGCTCGCTACGACTTCCAAAGCCGGCAAAGCGTCGA
TCAAATTAGCGTCGGCGCCGGAACTGGAACTGACGACTACTGCTCTGATCGATTGCGCGTTTTGCTGAAGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGA
TTGAAGCGTTGTTCAAGCTGTTTTTCGAGGGCACCAAAAAAGCTTCGGCGGATTGCAGTAATTTTCTGAAATATGAGAGCTCTTTGGGGATTTTGCTTTGTGGTTTTGTT
TAA
Protein sequenceShow/hide protein sequence
MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGVERMNPELEEIEALFKLFFEGSKKFQRTATIHGAILKFSCSCPSQTT
IKQRGDELRFIDVSASSNVDKKATWPQCIDYFSIDNVDICVIYRIPSHQIISAISPLYLSTNKCRAYLRSQSKIAFGPRSTPDEPIALTNPPRNRNGQTNCGIGDIIGQH
IGRIGNPNPLLHTFRQINFVDSHTEARYDFQSRQSVDQISVGAGTGTDDYCSDRLRVLLKVIGVERMNPELEEIEALFKLFFEGTKKASADCSNFLKYESSLGILLCGFV