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CmoCh08G006830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G006830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionactivating signal cointegrator 1 complex subunit 1
Genome locationCmo_Chr08:4367874..4370573
RNA-Seq ExpressionCmoCh08G006830
SyntenyCmoCh08G006830
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593476.1 hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sororia]6.4e-4196.63Show/hide
Query:  MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG
        MLNDLCRSGRDQAGVA+ SLQVSFQGLYADDGWSL ANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG
Subjt:  MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG

KAG7025820.1 hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma]3.2e-3295.89Show/hide
Query:  MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE
        MLNDLCRSGRDQAGVA+ SLQVSFQGLYADDGWSL ANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE
Subjt:  MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE

XP_022149236.1 uncharacterized protein LOC111017681 isoform X3 [Momordica charantia]4.2e-1661.9Show/hide
Query:  CRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEA----GLVLEKDAKQ
        C    D+AG+A+ SLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV  HASPSE+     G V  KD  Q
Subjt:  CRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEA----GLVLEKDAKQ

XP_022954065.1 uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata]1.9e-1663.29Show/hide
Query:  DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG
        D+AGVA+ SLQVSFQGLY  +GWSLNANM GKKEF   ADQKKK KT++Q WRPV   ASPSE+  LV++ D  +   G
Subjt:  DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG

XP_023549271.1 activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo]2.1e-1560.76Show/hide
Query:  DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG
        D+AGVA+ SLQVSFQGLY  +GWSLNANM  KKEF   ADQKKK KT++Q WRPV   ASPSE+  L+++ D  +   G
Subjt:  DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG

TrEMBL top hitse value%identityAlignment
A0A0A0K963 KH domain-containing protein1.5e-1148.08Show/hide
Query:  LNDLCRSGRDQAGV----------ADGSLQVSF------QGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQ
        LN LC SGR    +           D  L+ +        GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA PSE+  L +E D  +
Subjt:  LNDLCRSGRDQAGV----------ADGSLQVSF------QGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQ

Query:  KLKG
           G
Subjt:  KLKG

A0A1S3CGC2 activating signal cointegrator 1 complex subunit 12.2e-1073.47Show/hide
Query:  GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE
        GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE+
Subjt:  GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE

A0A5D3C0W5 Activating signal cointegrator 1 complex subunit 12.2e-1073.47Show/hide
Query:  GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE
        GLYA +GW LNANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE+
Subjt:  GLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEE

A0A6J1D7S4 uncharacterized protein LOC111017681 isoform X32.0e-1661.9Show/hide
Query:  CRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEA----GLVLEKDAKQ
        C    D+AG+A+ SLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV  HASPSE+     G V  KD  Q
Subjt:  CRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEA----GLVLEKDAKQ

A0A6J1GRE7 uncharacterized protein LOC111456441 isoform X29.1e-1763.29Show/hide
Query:  DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG
        D+AGVA+ SLQVSFQGLY  +GWSLNANM GKKEF   ADQKKK KT++Q WRPV   ASPSE+  LV++ D  +   G
Subjt:  DQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGC
GAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGG
AAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGGATGGTAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGATGGTTGGAGCCTGAATGC
GAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGG
AAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA
Protein sequenceShow/hide protein sequence
MLNDLCRSGRDQAGVADGSLQVSFQGLYADDGWSLNANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG