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CmoCh08G007230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G007230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L28-2 isoform B
Genome locationCmo_Chr08:4548114..4548365
RNA-Seq ExpressionCmoCh08G007230
SyntenyCmoCh08G007230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059447.1 hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa]2.9e-2784.34Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR
        MSVKKSLSLTKAEEAKR  RH+AARKRRRSFDLCFS P+LPME GKSLKEM+SEKLK+GI+KWAK+VVAYAR VS+RFGS RR
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR

KAG6575488.1 hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia]7.6e-2886.59Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWR
        MSVKKS SLTKAEEAKR  RH AARKRRRSFDLCFSSP+LPME+GKSLKEMDSEKLK  IRKWAK+VVAYAR VSNRFGS R
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWR

KAG6593505.1 hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3295.18Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR
        MSVKKSLSLTKAEEAKRSARH AARKRRRSFDLCFSSPKL ME GKSLKEMDSEKLKSGIRKWAKSVVAYARQVS+RFGSWRR
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR

KGN45542.1 hypothetical protein Csa_016865 [Cucumis sativus]4.9e-2783.13Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR
        MSVKKSLSLTKAEEAKR  RH+AARKRRRSFDLCFS P++PME GKSLKEM+SEKLK+GI+KWAK+VVAYAR VS+RFGS RR
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR

XP_028964144.1 uncharacterized protein LOC114827006 [Malus domestica]9.0e-1353.47Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARK-------------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSW
        MSVKKSLSL      K  A  K  RK                   +R  FD CFS  ++  E GKSLKEMDSEKLKSGI++WAK+VVAYARQVS+RFGS 
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARK-------------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSW

Query:  R
        R
Subjt:  R

TrEMBL top hitse value%identityAlignment
A0A0A0KB03 Uncharacterized protein2.4e-2783.13Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR
        MSVKKSLSLTKAEEAKR  RH+AARKRRRSFDLCFS P++PME GKSLKEM+SEKLK+GI+KWAK+VVAYAR VS+RFGS RR
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR

A0A498IZM5 Uncharacterized protein4.3e-1353.47Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARK-------------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSW
        MSVKKSLSL      K  A  K  RK                   +R  FD CFS  ++  E GKSLKEMDSEKLKSGI++WAK+VVAYARQVS+RFGS 
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARK-------------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSW

Query:  R
        R
Subjt:  R

A0A540KWP0 Uncharacterized protein4.3e-1353.47Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARK-------------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSW
        MSVKKSLSL      K  A  K  RK                   +R  FD CFS  ++  E GKSLKEMDSEKLKSGI++WAK+VVAYARQVS+RFGS 
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARK-------------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSW

Query:  R
        R
Subjt:  R

A0A5A7UXU0 Uncharacterized protein1.4e-2784.34Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR
        MSVKKSLSLTKAEEAKR  RH+AARKRRRSFDLCFS P+LPME GKSLKEM+SEKLK+GI+KWAK+VVAYAR VS+RFGS RR
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR

A0A5E4F872 PREDICTED: PHAVU_010G142400g4.3e-1353.06Show/hide
Query:  MSVKKSLSLTKAEEAKRSARHKAARK----------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWR
        MSVKKSLSL         A  K  +K                +RR FD CFS  ++  E GKSLK+MDSEKLKSGIR+WAK+VVAYARQVS RFG  R
Subjt:  MSVKKSLSLTKAEEAKRSARHKAARK----------------RRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGAAGAAGTCTCTATCTCTAACCAAAGCTGAGGAGGCCAAGCGCTCGGCGAGGCACAAGGCTGCCAGAAAGCGCAGGAGATCTTTCGATCTCTGTTTCTCGTC
CCCAAAACTACCAATGGAACATGGGAAGTCTTTGAAAGAGATGGATTCGGAGAAGTTGAAGAGTGGGATCAGGAAATGGGCTAAATCCGTGGTAGCTTATGCTCGGCAAG
TAAGCAATCGGTTTGGAAGCTGGCGTCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGAAGAAGTCTCTATCTCTAACCAAAGCTGAGGAGGCCAAGCGCTCGGCGAGGCACAAGGCTGCCAGAAAGCGCAGGAGATCTTTCGATCTCTGTTTCTCGTC
CCCAAAACTACCAATGGAACATGGGAAGTCTTTGAAAGAGATGGATTCGGAGAAGTTGAAGAGTGGGATCAGGAAATGGGCTAAATCCGTGGTAGCTTATGCTCGGCAAG
TAAGCAATCGGTTTGGAAGCTGGCGTCGGTAA
Protein sequenceShow/hide protein sequence
MSVKKSLSLTKAEEAKRSARHKAARKRRRSFDLCFSSPKLPMEHGKSLKEMDSEKLKSGIRKWAKSVVAYARQVSNRFGSWRR