; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G007300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G007300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCmo_Chr08:4592005..4593669
RNA-Seq ExpressionCmoCh08G007300
SyntenyCmoCh08G007300
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
GO:0030247 - polysaccharide binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN73071.1 hypothetical protein VITISV_032383 [Vitis vinifera]8.5e-30193.27Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALL+STEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LVPRP NTNIVGSKWVFR KY PDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI  QPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGG
        V+AGKLRT+YVPSHLQVADIFTKS+SRPLFEFFRSKL++RSNPTLSLRGG
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGG

RVW19545.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.4e-30593.86Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TWTLVPRP NTNIVGSKWVFR KYLPDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI +QPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGGVKDS
        V+AGKLRTQYVPSHLQVADIFTKS+SRPLFEFFRSKL++RSNPTLSLRGGVKD+
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGGVKDS

RVW41798.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.0e-28593.16Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLL ALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LVPRP NTNIVGSKWVFR KYLPDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYID RFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSL+YFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI +QPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSIS
        V+AGKLRTQYVPSHLQVADIFTKS S
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSIS

RVW45095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.8e-29692.35Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LV RP NTNIVGSKWVFR KY PDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPLRQLDV NAFLNGTL E V+MEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSF 
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHS+F+TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRA LLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHA T DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLKVPI +QPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRG
        V+AGKLRTQYVPSHLQVADIFTKS+SRPLFEFFRSKL++RSNPTLSLRG
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRG

RVX01763.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.2e-28593.16Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LVPRP NTNIVGSKWVFR KYLPDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYID RFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSL+YFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSW+AKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI +QPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSIS
        V+AGKLRTQYVPSHLQVADIFTKS S
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSIS

TrEMBL top hitse value%identityAlignment
A0A438C8F7 Retrovirus-related Pol polyprotein from transposon RE13.6e-30593.86Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TWTLVPRP NTNIVGSKWVFR KYLPDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI +QPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGGVKDS
        V+AGKLRTQYVPSHLQVADIFTKS+SRPLFEFFRSKL++RSNPTLSLRGGVKD+
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGGVKDS

A0A438E275 Retrovirus-related Pol polyprotein from transposon RE12.4e-28593.16Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLL ALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LVPRP NTNIVGSKWVFR KYLPDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYID RFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSL+YFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI +QPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSIS
        V+AGKLRTQYVPSHLQVADIFTKS S
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSIS

A0A438EBA0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-29692.35Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LV RP NTNIVGSKWVFR KY PDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPLRQLDV NAFLNGTL E V+MEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSF 
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHS+F+TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRA LLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHA T DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLKVPI +QPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRG
        V+AGKLRTQYVPSHLQVADIFTKS+SRPLFEFFRSKL++RSNPTLSLRG
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRG

A0A438IYJ9 Retrovirus-related Pol polyprotein from transposon RE11.1e-28593.16Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALLASTEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LVPRP NTNIVGSKWVFR KYLPDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYID RFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSL+YFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSW+AKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI +QPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSIS
        V+AGKLRTQYVPSHLQVADIFTKS S
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSIS

A5C5R8 Integrase catalytic domain-containing protein4.1e-30193.27Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        MITRAKAGIFKTRHPANLG+LGSSGLLSALL+STEPKGFKSAAKNPAW+AAMDEE+QALQQN TW LVPRP NTNIVGSKWVFR KY PDGSVER KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
        VAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPLRQLDVKNAFLNGTL E V+MEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFL

Query:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
        LTLGFSCSRADTSLFVFHQQS++IYLLLYVDDIIVTGNN SL+DSFTRKLHSEF+TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV
Subjt:  LTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPV

Query:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP
        HTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTITRPDIA+AVNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPS +PS LVAYSDADWAGCP
Subjt:  HTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCP

Query:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL
        DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALA TAAELLW+THLLHDLKVPI  QPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLREL
Subjt:  DTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLREL

Query:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGG
        V+AGKLRT+YVPSHLQVADIFTKS+SRPLFEFFRSKL++RSNPTLSLRGG
Subjt:  VIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGG

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.4e-9337.42Show/hide
Query:  AWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVK
        +W  A++ E+ A + N+TWT+  RP N NIV S+WVF +KY   G+  R+KARLVA+G+TQ   +DY +TF+PV + ++ R +LS+ +     + Q+DVK
Subjt:  AWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVK

Query:  NAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNI---IYLLLYVDDIIVTGNNSSLI
         AFLNGTL E ++M  P G        +VC L KA+YGLKQA R WF+ F   L    F  S  D  +++   + NI   IY+LLYVDD+++   + + +
Subjt:  NAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNI---IYLLLYVDDIIVTGNNSSLI

Query:  DSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTI-TRPDIAY
        ++F R L  +F   DL  + +F+G+      D +++SQ  Y + IL++  + +   V TP+    +     S     T  RSL+G L Y+ + TRPD+  
Subjt:  DSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTI-TRPDIAY

Query:  AVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPS-NVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGN-NLVSWSAKKQPTVSRSSCESEYRAL
        AVN +S++     ++ +  +KR+LRY+KGT+   L F+ +    + ++ Y D+DWAG    R+ST+GY   + + NL+ W+ K+Q +V+ SS E+EY AL
Subjt:  AVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPS-NVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGN-NLVSWSAKKQPTVSRSSCESEYRAL

Query:  ATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKL
             E LW+  LL  + + +     +  DN+  I  ++NP  HKRAKH+++ YHF RE V    +  +Y+P+  Q+ADIFTK +    F   R KL
Subjt:  ATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-9138.12Show/hide
Query:  EPKGFKSAAKNP---AWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLS
        EP+  K    +P     + AM EE+++LQ+N T+ LV  P     +  KWVF++K   D  + R+KARLV KG+ Q  G+D+ + FSPVVK T++R +LS
Subjt:  EPKGFKSAAKNP---AWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLS

Query:  IAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSL-FVFHQQSNIIYLLLYV
        +A +    + QLDVK AFL+G L E ++MEQP G+        VC L K+LYGLKQAPR W+ +F SF+ +  +  + +D  + F    ++N I LLLYV
Subjt:  IAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSL-FVFHQQSNIIYLLLYV

Query:  DDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLE--ASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFS-------DPT
        DD+++ G +  LI      L   F  KDLG     LG++     T   L++SQ KY   +L R  + ++KPV TP+     L+    P +          
Subjt:  DDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLE--ASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFS-------DPT

Query:  LYRSLVGALQY-LTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSW
         Y S VG+L Y +  TRPDIA+AV  VS+FL  P  +H+ AVK ILRY++GT    L F  S+    L  Y+DAD AG  D R+S++GY        +SW
Subjt:  LYRSLVGALQY-LTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSW

Query:  SAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADI
         +K Q  V+ S+ E+EY A   T  E++W+   L +L +   K+ ++ CD++SAI  S N + H R KH+++ YH++RE+V    L+   + ++   AD+
Subjt:  SAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADI

Query:  FTKSISRPLFEFFRSKLYVRSN
         TK + R  FE  +  + + SN
Subjt:  FTKSISRPLFEFFRSKLYVRSN

P92519 Uncharacterized mitochondrial protein AtMg008101.8e-6454.42Show/hide
Query:  IYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLY
        +YLLLYVDDI++TG++++L++    +L S FS KDLG + YFLG++    P GLF+SQ KYA  IL  A +LD KP+ TP+ +  + +   + + DP+ +
Subjt:  IYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLY

Query:  RSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAK
        RS+VGALQYLT+TRPDI+YAVN V Q +H PT   F  +KR+LRYVKGT+  GL +   N    + A+ D+DWAGC  TRRST+G+  +LG N++SWSAK
Subjt:  RSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAK

Query:  KQPTVSRSSCESEYRALATTAAELLW
        +QPTVSRSS E+EYRALA TAAEL W
Subjt:  KQPTVSRSSCESEYRALATTAAELLW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.3e-15250.28Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLV-PRPANTNIVGSKWVFRIKYLPDGSVERFKAR
        M TRAKAGI K     +L +        +L A +EP+    A K+  W  AM  EI A   N TW LV P P++  IVG +W+F  KY  DGS+ R+KAR
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLV-PRPANTNIVGSKWVFRIKYLPDGSVERFKAR

Query:  LVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSF
        LVAKGY Q PGLDY +TFSPV+K+T++R+VL +AV   WP+RQLDV NAFL GTL + V+M QPPG+ID   P +VC L+KALYGLKQAPRAW+    ++
Subjt:  LVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSF

Query:  LLTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKP
        LLT+GF  S +DTSLFV  +  +I+Y+L+YVDDI++TGN+ +L+ +    L   FS KD   L YFLG+EA   P GL +SQ +Y  D+L R  ++ +KP
Subjt:  LLTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKP

Query:  VHTPMVVSQHLTA-DGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAG
        V TPM  S  L+   G+  +DPT YR +VG+LQYL  TRPDI+YAVN +SQF+H PT +H  A+KRILRY+ GT + G+  +  N  S L AYSDADWAG
Subjt:  VHTPMVVSQHLTA-DGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAG

Query:  CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLR
          D   ST+GY +YLG++ +SWS+KKQ  V RSS E+EYR++A T++E+ W+  LL +L + +++ P++ CDN  A +  +NPV H R KH+ +DYHF+R
Subjt:  CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLR

Query:  ELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNP
          V +G LR  +V +H Q+AD  TK +SR  F+ F SK+ V   P
Subjt:  ELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.9e-14949.72Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLV-PRPANTNIVGSKWVFRIKYLPDGSVERFKAR
        M TRAK GI K     +          ++L A++EP+    A K+  W  AM  EI A   N TW LV P P +  IVG +W+F  K+  DGS+ R+KAR
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLV-PRPANTNIVGSKWVFRIKYLPDGSVERFKAR

Query:  LVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSF
        LVAKGY Q PGLDY +TFSPV+K+T++R+VL +AV   WP+RQLDV NAFL GTL + V+M QPPG++D   P +VC L+KA+YGLKQAPRAW+    ++
Subjt:  LVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSF

Query:  LLTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKP
        LLT+GF  S +DTSLFV  +  +IIY+L+YVDDI++TGN++ L+      L   FS K+   L YFLG+EA   P GL +SQ +Y  D+L R  +L +KP
Subjt:  LLTLGFSCSRADTSLFVFHQQSNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKP

Query:  VHTPMVVSQHLTA-DGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAG
        V TPM  S  LT   G+   DPT YR +VG+LQYL  TRPD++YAVN +SQ++H PT DH+ A+KR+LRY+ GT   G+  +  N  S L AYSDADWAG
Subjt:  VHTPMVVSQHLTA-DGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAG

Query:  CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLR
          D   ST+GY +YLG++ +SWS+KKQ  V RSS E+EYR++A T++EL W+  LL +L + +S  P++ CDN  A +  +NPV H R KH+ LDYHF+R
Subjt:  CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLR

Query:  ELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNP
          V +G LR  +V +H Q+AD  TK +SR  F+ F  K+ V   P
Subjt:  ELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNP

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.3e-11846.03Show/hide
Query:  LSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTV
        L  +  + EP  +  A +   W  AMD+EI A++   TW +   P N   +G KWV++IKY  DG++ER+KARLVAKGYTQ  G+D+ +TFSPV K T+V
Subjt:  LSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTV

Query:  RVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYI----DPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSN
        +++L+I+    + L QLD+ NAFLNG L E ++M+ PPGY     D   P  VC LKK++YGLKQA R WF +FS  L+  GF  S +D + F+    + 
Subjt:  RVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYI----DPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSN

Query:  IIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPFSDPT
         + +L+YVDDII+  NN + +D    +L S F  +DLG L YFLGLE + +  G+ I Q KYA D+L    LL  KP   PM  S   +A  G  F D  
Subjt:  IIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPFSDPT

Query:  LYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWS
         YR L+G L YL ITR DI++AVN +SQF  AP   H  AV +IL Y+KGT+  GL F  S     L  +SDA +  C DTRRST+GY ++LG +L+SW 
Subjt:  LYRSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWS

Query:  AKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRE
        +KKQ  VS+SS E+EYRAL+    E++W+     +L++P+SK  LL CDN +AI  ++N V H+R KH+E D H +RE
Subjt:  AKKQPTVSRSSCESEYRALATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRE

ATMG00240.1 Gag-Pol-related retrotransposon family protein4.7e-1551.28Show/hide
Query:  YLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGY
        YLTITRPD+ +AVN +SQF  A       AV ++L YVKGT+  GL F  +     L A++D+DWA CPDTRRS +G+
Subjt:  YLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein1.3e-6554.42Show/hide
Query:  IYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLY
        +YLLLYVDDI++TG++++L++    +L S FS KDLG + YFLG++    P GLF+SQ KYA  IL  A +LD KP+ TP+ +  + +   + + DP+ +
Subjt:  IYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLY

Query:  RSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAK
        RS+VGALQYLT+TRPDI+YAVN V Q +H PT   F  +KR+LRYVKGT+  GL +   N    + A+ D+DWAGC  TRRST+G+  +LG N++SWSAK
Subjt:  RSLVGALQYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAK

Query:  KQPTVSRSSCESEYRALATTAAELLW
        +QPTVSRSS E+EYRALA TAAEL W
Subjt:  KQPTVSRSSCESEYRALATTAAELLW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)5.4e-2745.86Show/hide
Query:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL
        M+TR+KAGI K     +L I              EPK    A K+P W  AM EE+ AL +N TW LVP P N NI+G KWVF+ K   DG+++R KARL
Subjt:  MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARL

Query:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIA
        VAKG+ Q  G+ + +T+SPVV+  T+R +L++A
Subjt:  VAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACACGAGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAA
AGGATTCAAATCTGCGGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCAAGCATTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCTAACA
CCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCTGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGT
CTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAA
TGCTTTTCTCAATGGAACTCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATATTGATCCTCGATTTCCCACTCATGTTTGTCTATTAAAGAAAGCCCTCTATG
GTTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAA
TCTAACATTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTGACAGCTTTACTCGCAAGCTTCATTCTGAGTTTTCTACCAA
AGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGT
TGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAACACTTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTT
CAGTACTTGACTATTACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCG
CTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCAATGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTC
GTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTGGTTTCTTGGAGTGCCAAAAAGCAACCTACTGTCTCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTT
GCCACAACCGCTGCTGAACTTCTTTGGGTGACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCAAAGCAGCCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTT
TAGCTCTAATCCCGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTCCTTCGAGAACTTGTTATCGCTGGCAAACTTCGCACACAATATGTACCCTCTC
ATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTTACGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGT
GTTAAGGATAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCACACGAGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAA
AGGATTCAAATCTGCGGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCAAGCATTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCTAACA
CCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCTGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGT
CTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAA
TGCTTTTCTCAATGGAACTCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATATTGATCCTCGATTTCCCACTCATGTTTGTCTATTAAAGAAAGCCCTCTATG
GTTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAA
TCTAACATTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTGACAGCTTTACTCGCAAGCTTCATTCTGAGTTTTCTACCAA
AGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGT
TGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAACACTTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTT
CAGTACTTGACTATTACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCG
CTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCAATGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTC
GTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTGGTTTCTTGGAGTGCCAAAAAGCAACCTACTGTCTCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTT
GCCACAACCGCTGCTGAACTTCTTTGGGTGACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCAAAGCAGCCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTT
TAGCTCTAATCCCGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTCCTTCGAGAACTTGTTATCGCTGGCAAACTTCGCACACAATATGTACCCTCTC
ATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTTACGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGT
GTTAAGGATAGTTGA
Protein sequenceShow/hide protein sequence
MITRAKAGIFKTRHPANLGILGSSGLLSALLASTEPKGFKSAAKNPAWVAAMDEEIQALQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVERFKARLVAKGYTQVPG
LDYTDTFSPVVKATTVRVVLSIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQ
SNIIYLLLYVDDIIVTGNNSSLIDSFTRKLHSEFSTKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGAL
QYLTITRPDIAYAVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSNVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRAL
ATTAAELLWVTHLLHDLKVPISKQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLYVRSNPTLSLRGG
VKDS