; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G007330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G007330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationCmo_Chr08:4616648..4621036
RNA-Seq ExpressionCmoCh08G007330
SyntenyCmoCh08G007330
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025857.1 RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argyrosperma]9.7e-14699.62Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNP SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_022964622.1 protein WHI4 [Cucurbita moschata]1.9e-146100Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]2.8e-14599.24Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]3.3e-14699.62Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_038898771.1 protein WHI4 isoform X1 [Benincasa hispida]4.8e-13793.13Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DGGSEPDEPSKK EQS EA+V P N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein1.5e-13692.37Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPD  YS+R+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DGGSEPDEPSKK +QSNEAVV P N +SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A5A7V0X3 Protein WHI41.2e-13692.37Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DGGSEPDEPSKK +QSNEAVV P + +SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X14.0e-13793.51Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1HI97 protein WHI49.4e-147100Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 21.4e-14599.24Show/hide
Query:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a3.5e-1338.95Show/hide
Query:  QPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + +++ S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  QPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 22.9e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 22.9e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.3e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 22.7e-1340.22Show/hide
Query:  SNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        +N +    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  SNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-3937.97Show/hide
Query:  AHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R+ + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLS-------APYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T++E G      P   +   N    +P            AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLS-------APYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGG-MHIEYARSKM
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ L  LQG++L SS  G  + ++YARS+M
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3737.8Show/hide
Query:  AHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R+ + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLS-------APYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T++E G      P   +   N    +P            AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLS-------APYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ L  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein4.2e-3837.45Show/hide
Query:  AHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R+ + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLS-------APYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T++E G      P   +   N    +P            AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLS-------APYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRK
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ L  LQG++L SS  G +    +R  MRK
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-8055.97Show/hide
Query:  HQPYDPYYLY-------HQPDS---NYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H P        +   INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HQPDS---NYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDE---------PSKKTEQSNEAVVAPGNPLS
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R K  S +Q+  S++G S+PDE         P +     +EA   P +   
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDE---------PSKKTEQSNEAVVAPGNPLS

Query:  APYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIE
        +   H EK ++GG     CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  +  LQG++L SSDRGGMHIE
Subjt:  APYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.8e-8860.78Show/hide
Query:  HQPYDPYYLY-------HQPDS---NYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H P        +   INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HQPDS---NYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDE---------PSKKTEQSNEAVVAPGNPLSAPYEHHEK-NDGG----P
        Q+GS LHIELARSNSRRK +PG G YVVID R K  S +Q+  S++G S+PDE         P +     +EA   P +   +   H EK ++GG     
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDE---------PSKKTEQSNEAVVAPGNPLSAPYEHHEK-NDGG----P

Query:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRK
        CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  +  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCAGCCTTATGATCCTTACTATCTCTATCATCAACCAGACTCGAACTACAGTGACCGGAACAACATCAACACGCTCTTCATCTCCGGCCTCCCTGACGACGT
CAAGGCTCGCGAGATTCATAACCTTTTCCGTCGTCGGCCGGGCTTCGACTCGTGCCAGCTCAAGTATACTGGGCGCGGCAACCAGGTTGTGGCGTTCGCCACCTTTTACA
ATCACCAATCAGCCGTGACAGCGCTTCATGCATTAAATGGAGTCAAATTTGACCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAA
CATAAGCCAGGCGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAAGTGACTCCAATGCCCAGGAAACATCAAGCGAGGATGGAGGCAGTGAACCGGATGAACCATC
AAAGAAGACCGAACAAAGCAACGAGGCTGTGGTGGCTCCTGGTAATCCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTCA
TCGCAAATCTTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCA
TTTGCTGATTTTGAGGAAATTGAACAAGCTAGCAAGGTTTTGGAGGAGCTTCAGGGCAGCATGCTACCATCATCAGACCGCGGGGGCATGCATATAGAGTACGCTCGGTC
TAAAATGAGGAAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
TGGAAGGTTAAGTATGAAAAATTTTAAAATTGGACCGAAACATAAACACACTAAAGAGGGATTTTTACTCACTCCCACACTCCGCCGTGCTCGGCGTTAATTCCGGCCAA
ATTTACATCGATTTTGCCGTGAATTCCACTGGTTGTTTGCCGATGGCTCACCAGCCTTATGATCCTTACTATCTCTATCATCAACCAGACTCGAACTACAGTGACCGGAA
CAACATCAACACGCTCTTCATCTCCGGCCTCCCTGACGACGTCAAGGCTCGCGAGATTCATAACCTTTTCCGTCGTCGGCCGGGCTTCGACTCGTGCCAGCTCAAGTATA
CTGGGCGCGGCAACCAGGTTGTGGCGTTCGCCACCTTTTACAATCACCAATCAGCCGTGACAGCGCTTCATGCATTAAATGGAGTCAAATTTGACCCACAAAGTGGATCA
GTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGCGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAAGTGACTCCAATGCCCAGGA
AACATCAAGCGAGGATGGAGGCAGTGAACCGGATGAACCATCAAAGAAGACCGAACAAAGCAACGAGGCTGTGGTGGCTCCTGGTAATCCTCTATCTGCTCCATATGAGC
ATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTCATCGCAAATCTTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTC
AACGTGCTCAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAGCAAGGTTTTGGAGGAGCTTCAGGGCAGCATGCTACC
ATCATCAGACCGCGGGGGCATGCATATAGAGTACGCTCGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCACTGATCAGTCTAATATGATTCAAAAAGTCTGATTGATTT
GCTGCGAGGAATGCTTGGTTGTGGTTATGGCCCACTCATTTGCTGCTGCTCTGAAGTTTTATGGCATTCATCAGTCTGGTATCTCTCCCTAAATAATGATTATAAATTAT
GTAAACAGATAAGTTCATGGACAGTTTAAGTAGAAGCACATAGTTAAGTATCGTTACATATTGGAAGTCGTTTCGTTTTTGGATTTTTAGTTCGATGAAGGCTGTTGTTA
TCTCATAGTGTAAGTGTTAGGAGAAGCTTTCTAAGCTAAACCAGGAGCTGTCTTTAGCTCGGAGGAGTCCCCTCAAGACTACCAATAGTTTTGGTCGTAGAATCTCGTGC
TAGTTAGGTTGTAATTTCTTAGTTAAAAAAGATAGAAGAGAGGAA
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRK
HKPGGGAYVVIDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVA
FADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMRKS