| GenBank top hits | e value | %identity | Alignment |
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| AAM08505.1 Putative retroelement [Oryza sativa Japonica Group] | 3.9e-32 | 45.73 | Show/hide |
Query: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
P S++G P + V P TT+G V + + + H Y RL + +YG+DY+DTF+ VVKP TIR +LS+V+SRGW++RQ+D+QNAFL
Subjt: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
Query: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
L ++VYMKQP P+ + L K+LY LKQA W++R SKL LGF SKAD+SL SK G+ M++LIYVDDII+ SS+ T+ LL+ L
Subjt: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| ABB46598.2 retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group] | 3.9e-32 | 45.73 | Show/hide |
Query: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
P S++G P + V P TT+G V + + + H Y RL + +YG+DY+DTF+ VVKP TIR +LS+V+SRGW++RQ+D+QNAFL
Subjt: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
Query: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
L ++VYMKQP P+ + L K+LY LKQA W++R SKL LGF SKAD+SL SK G+ M++LIYVDDII+ SS+ T+ LL+ L
Subjt: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| ACY72569.1 unknown [Oryza sativa Japonica Group] | 2.3e-32 | 50.31 | Show/hide |
Query: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCA
T Y RL + +YG+DY+DTF+ VVK TIR++LS+ +SRGW++RQ+D+QNAFL FL ++VYM+QPP + L K+LY LKQA A
Subjt: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCA
Query: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
W+SR KL++LGF SKAD SL +K GI M++L+YVDDIII SS+ T LL L
Subjt: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| CAE04319.3 OSJNBb0016D16.10 [Oryza sativa Japonica Group] | 1.8e-32 | 50.31 | Show/hide |
Query: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCA
T Y RL + +YG+DY+DTF+SVVK TIR++LS+ ISRGW++RQ+D+QN FL FL ++VYM+QPP + L K+LY LKQA A
Subjt: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCA
Query: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
W+SR KL++LGF SKAD SL +K GI M++L+YVDDII+ SS+ T LL L
Subjt: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| XP_035816648.1 uncharacterized protein LOC115072894 isoform X1 [Zea mays] | 2.3e-32 | 55.24 | Show/hide |
Query: KYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCAWFSRHRSKLLQLGFTP
+YG+DY DTF VVKPTTIR++LSL +S+GW++RQIDIQNAFL L ++VYM+QPP N L K+LY LKQA AW SR KL +LGF
Subjt: KYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCAWFSRHRSKLLQLGFTP
Query: SKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
S AD SL +F + G+ +Y+LIYVDDIII+SS+ + T+KL+ +L
Subjt: SKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| D1CS18 Integrase catalytic domain-containing protein | 1.1e-32 | 50.31 | Show/hide |
Query: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCA
T Y RL + +YG+DY+DTF+ VVK TIR++LS+ +SRGW++RQ+D+QNAFL FL ++VYM+QPP + L K+LY LKQA A
Subjt: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCA
Query: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
W+SR KL++LGF SKAD SL +K GI M++L+YVDDIII SS+ T LL L
Subjt: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| O24438 Retrofit | 1.9e-32 | 49.69 | Show/hide |
Query: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCA
T Y RL + +YG+DY+DTF+ VVK TIR++LS+ +SRGW++RQ+D+QNAFL FL ++VYM+QPP + L K+LY LKQA A
Subjt: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCA
Query: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
W+SR KL++LGF SKAD SL +K GI M++L+YVDDII+ SS+ T LL L
Subjt: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| Q33BH1 Retrotransposon protein, putative, Ty1-copia subclass, expressed | 1.9e-32 | 45.73 | Show/hide |
Query: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
P S++G P + V P TT+G V + + + H Y RL + +YG+DY+DTF+ VVKP TIR +LS+V+SRGW++RQ+D+QNAFL
Subjt: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
Query: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
L ++VYMKQP P+ + L K+LY LKQA W++R SKL LGF SKAD+SL SK G+ M++LIYVDDII+ SS+ T+ LL+ L
Subjt: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| Q7XN23 OSJNBb0016D16.10 protein | 8.5e-33 | 50.31 | Show/hide |
Query: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCA
T Y RL + +YG+DY+DTF+SVVK TIR++LS+ ISRGW++RQ+D+QN FL FL ++VYM+QPP + L K+LY LKQA A
Subjt: TTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCA
Query: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
W+SR KL++LGF SKAD SL +K GI M++L+YVDDII+ SS+ T LL L
Subjt: WFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| Q8S7Z6 Putative retroelement | 1.9e-32 | 45.73 | Show/hide |
Query: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
P S++G P + V P TT+G V + + + H Y RL + +YG+DY+DTF+ VVKP TIR +LS+V+SRGW++RQ+D+QNAFL
Subjt: PDRISVVGRPTAVALVAPLTTAGTTVPL----VVDPAPTTHPYSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNF
Query: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
L ++VYMKQP P+ + L K+LY LKQA W++R SKL LGF SKAD+SL SK G+ M++LIYVDDII+ SS+ T+ LL+ L
Subjt: LNKDVYMKQP--------PDLWILNILVKSLYDLKQALCAWFSRHRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 4.5e-15 | 32.26 | Show/hide |
Query: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWI----LNILVKSLYDLKQALCAWFSRHR
Y RL KY +DY++TF V + ++ R +LSLVI + Q+D++ AFL L +++YM+ P + + L K++Y LKQA WF
Subjt: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWI----LNILVKSLYDLKQALCAWFSRHR
Query: SKLLQLGFTPSKADVSLSIFSKTGI--RMYILIYVDDIIIISSSSTTTEKLLTHL
L + F S D + I K I +Y+L+YVDD++I + T +L
Subjt: SKLLQLGFTPSKADVSLSIFSKTGI--RMYILIYVDDIIIISSSSTTTEKLLTHL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.5e-13 | 33.33 | Show/hide |
Query: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCAWFSR
Y RL + K G+D+D+ F+ VVK T+IR +LSL S + Q+D++ AFL L +++YM+QP + L KSLY LKQA W+ +
Subjt: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILN------ILVKSLYDLKQALCAWFSR
Query: HRSKLLQLGFTPSKAD--VSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKL
S + + + +D V FS+ + +L+YVDD++I+ KL
Subjt: HRSKLLQLGFTPSKAD--VSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKL
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| Q03855 Transposon Ty1-DR1 Gag-Pol polyprotein | 2.7e-07 | 27.97 | Show/hide |
Query: VDYDDTFNSVVKPTTIR-----LLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILNILV---KSLYDLKQALCAWFSRHRSKLL-QLGFTP
+ + DT++S ++ T+ LSL + + I Q+DI +A+L + +++Y++ PP L + + L+ KSLY LKQ+ W+ +S L+ Q G
Subjt: VDYDDTFNSVVKPTTIR-----LLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLWILNILV---KSLYDLKQALCAWFSRHRSKLL-QLGFTP
Query: SKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
+ +F + ++ I ++VDD+I+ S +K++T L
Subjt: SKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.6e-23 | 40 | Show/hide |
Query: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCAWFSR
Y RL + G+DY +TF+ V+K T+IR++L + + R W IRQ+D+ NAFL L DVYM QPP + L K+LY LKQA AW+
Subjt: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCAWFSR
Query: HRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
R+ LL +GF S +D SL + + +Y+L+YVDDI+I + T L +L
Subjt: HRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.5e-22 | 38.06 | Show/hide |
Query: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCAWFSR
Y RL + G+DY +TF+ V+K T+IR++L + + R W IRQ+D+ NAFL L +VYM QPP + L K++Y LKQA AW+
Subjt: YSTRLKHNIKQPKYGVDYDDTFNSVVKPTTIRLLLSLVISRGWAIRQIDIQNAFLLNFLNKDVYMKQPPDLW------ILNILVKSLYDLKQALCAWFSR
Query: HRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
R+ LL +GF S +D SL + + +Y+L+YVDDI+I + + + L L
Subjt: HRSKLLQLGFTPSKADVSLSIFSKTGIRMYILIYVDDIIIISSSSTTTEKLLTHL
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