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CmoCh08G007470 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G007470
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDead-box atp-dependent rna helicase
Genome locationCmo_Chr08:4724425..4727522
RNA-Seq ExpressionCmoCh08G007470
SyntenyCmoCh08G007470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593528.1 hypothetical protein SDJN03_13004, partial [Cucurbita argyrosperma subsp. sororia]9.4e-4096.7Show/hide
Query:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
        MEDPKT MKDSSSEEDARSINIFERLKEE+EAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPG+FERVKEEIEALVETIHPKKDSSNH
Subjt:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH

XP_023000451.1 uncharacterized protein LOC111494718 isoform X1 [Cucurbita maxima]2.6e-3795.6Show/hide
Query:  MEDPKTPMKDSSS-EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
        MEDPKTPMKDSSS EEDA+SINIFERLKEEMEAVIHSHESP HHKETHGTS+DIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
Subjt:  MEDPKTPMKDSSS-EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN

XP_023000452.1 uncharacterized protein LOC111494718 isoform X2 [Cucurbita maxima]1.0e-3896.67Show/hide
Query:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
        MEDPKTPMKDSSSEEDA+SINIFERLKEEMEAVIHSHESP HHKETHGTS+DIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
Subjt:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN

XP_023515025.1 uncharacterized protein LOC111779175 isoform X1 [Cucurbita pepo subsp. pepo]1.6e-3997.83Show/hide
Query:  MEDPKTPMKDSSS-EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
        MEDPKTPMKDSSS EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGT DDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
Subjt:  MEDPKTPMKDSSS-EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH

XP_023515027.1 uncharacterized protein LOC111779175 isoform X2 [Cucurbita pepo subsp. pepo]6.5e-4198.9Show/hide
Query:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
        MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGT DDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
Subjt:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH

TrEMBL top hitse value%identityAlignment
A0A0A0KAY9 Uncharacterized protein1.8e-2875.82Show/hide
Query:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
        ME+ KT +K SSSE + +S NIFER KEE+EAVIH ++SPRHHKETHG SDDIDETTPADEVKAPGVF RVKEE+EALV  IHPKKDS +H
Subjt:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH

A0A6J1CRC8 uncharacterized protein LOC111014044 isoform X11.5e-3078.26Show/hide
Query:  MEDPKTPMKDSSSE-EDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
        ME+PKT +KDSSSE +DA++ N+FER KEE+EA++HS++SPRHHKETHG SDDIDETTP+DEVKAPGVF RVKEEIEALV TIHPKKDS NH
Subjt:  MEDPKTPMKDSSSE-EDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH

A0A6J1CT17 uncharacterized protein LOC111014044 isoform X23.9e-3178.02Show/hide
Query:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH
        ME+PKT +KDSSS +DA++ N+FER KEE+EA++HS++SPRHHKETHG SDDIDETTP+DEVKAPGVF RVKEEIEALV TIHPKKDS NH
Subjt:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH

A0A6J1KDN6 uncharacterized protein LOC111494718 isoform X25.0e-3996.67Show/hide
Query:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
        MEDPKTPMKDSSSEEDA+SINIFERLKEEMEAVIHSHESP HHKETHGTS+DIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
Subjt:  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN

A0A6J1KFX0 uncharacterized protein LOC111494718 isoform X11.2e-3795.6Show/hide
Query:  MEDPKTPMKDSSS-EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
        MEDPKTPMKDSSS EEDA+SINIFERLKEEMEAVIHSHESP HHKETHGTS+DIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN
Subjt:  MEDPKTPMKDSSS-EEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G17490.1 unknown protein3.2e-0943.9Show/hide
Query:  PMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDS
        P + S SE      N+    KEE E++ H        KETHG S+DIDE T  D+VK PGV  R+ EE+EA+V+ + P K S
Subjt:  PMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDS

AT1G72690.1 unknown protein1.1e-1757.32Show/hide
Query:  KDSSSEEDARSINIFERLKEEMEAVIHSHES-PRHH-KETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDS
        ++ S E+  +S N+FER+KEE+EA+ H  +S  RHH KETHGTSDDIDE+TP D VK PG F+R+KEEIEA+   + PK+ S
Subjt:  KDSSSEEDARSINIFERLKEEMEAVIHSHES-PRHH-KETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDS

AT5G57000.1 unknown protein1.7e-1547.67Show/hide
Query:  KTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPR----HHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKK
        K   K    E+  +  N+ ++ +E+++++    + PR    HHKETHG SDDI E TP DEVKAP V ER KEEIEA+++TIH KK
Subjt:  KTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPR----HHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKK

AT5G57000.2 unknown protein1.5e-1448.28Show/hide
Query:  KTPMKDSSSEEDA-RSINIFERLKEEMEAVIHSHESPR----HHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKK
        K  M+  S + D  +  N+ ++ +E+++++    + PR    HHKETHG SDDI E TP DEVKAP V ER KEEIEA+++TIH KK
Subjt:  KTPMKDSSSEEDA-RSINIFERLKEEMEAVIHSHESPR----HHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATCCAAAGACTCCGATGAAAGATTCTTCTTCAGAAGAAGATGCAAGATCAATCAATATTTTTGAGAGACTTAAAGAAGAGATGGAGGCTGTGATTCACTCCCA
TGAATCACCTCGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCGTGTTTGAAAGAGTCAAGGAAG
AGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCCAGCAATCATTAG
mRNA sequenceShow/hide mRNA sequence
GGGGAAACTGGAAAGTGATAGTCTAGCGAGCAGACACAAGAGTGAGACGGGGTTAATCGATTCCACGGGAAAGCTCGAATGGAGGATCCAAAGACTCCGATGAAAGATTC
TTCTTCAGAAGAAGATGCAAGATCAATCAATATTTTTGAGAGACTTAAAGAAGAGATGGAGGCTGTGATTCACTCCCATGAATCACCTCGCCATCACAAAGAAACACATG
GAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCGTGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCC
AAGAAGGATTCCAGCAATCATTAGCTTTCTTTAAAGCAAGGAAGAGCGTTGATTGACACCATGCTGTTACAAGGGAATAGTGTGTCTTTAGAACTCTTCAAAGTAGTTCC
TACATTATCGTTGAAAATTGGAGCAGGGGAAATGCACGTGGGGCATCATAGAACACCAAGAAAGCATCCCTTCATCTTTCAAAACAAGATTGTCCATAAAACGCCAAGCA
CTCTGATCCACCCTTGTTTCCCCCGAACCCAAATCCCTCTTTGGAATTTTCCCGAGAAAACTATGAACTTTCCCTGAAAATTGTTGGGAGTGAGTCCCACGTTGG
Protein sequenceShow/hide protein sequence
MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGVFERVKEEIEALVETIHPKKDSSNH