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CmoCh08G007690 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G007690
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 9
Genome locationCmo_Chr08:4849198..4851537
RNA-Seq ExpressionCmoCh08G007690
SyntenyCmoCh08G007690
Gene Ontology termsGO:0043966 - histone H3 acetylation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domainsIPR003162 - Transcription initiation factor TAFII31


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575445.1 Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3154.19Show/hide
Query:  GNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAF
        G GGGYDNQNT FS EARP ++G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD V LA 
Subjt:  GNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAF

Query:  QSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGI LPP +     PNYQLA
Subjt:  QSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

KAG6593551.1 Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia]7.5e-4798.02Show/hide
Query:  MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGG
        MSRGNGG YDNQNTIFSREARP RVGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGG
Subjt:  MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGG

Query:  P
        P
Subjt:  P

KAG7013987.1 Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma]6.9e-3254.37Show/hide
Query:  MSRGN--GGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDG
        MSRG+  GGGYDNQNT FS EARP ++G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD 
Subjt:  MSRGN--GGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDG

Query:  VTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGI LPP +     PNYQLA
Subjt:  VTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

KAG7025893.1 Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3697.56Show/hide
Query:  GERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPP
        GERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGI +PP
Subjt:  GERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPP

XP_022144675.1 transcription initiation factor TFIID subunit 9 [Momordica charantia]9.6e-3455.06Show/hide
Query:  MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------------QARLLCDGVT
        MSRG GGGYDNQNT FS EARP ++GERGS+E+TEG++DLPRDA+I     +SM                                    +A + CD V 
Subjt:  MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------------QARLLCDGVT

Query:  LAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        LA QSKVNFSFS+P PREVLLELARNRNKIPLPR+IGGPGI LPP       PNYQLA
Subjt:  LAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

TrEMBL top hitse value%identityAlignment
A0A1S3CGN5 transcription initiation factor TFIID subunit 9 isoform X23.8e-2065.85Show/hide
Query:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGI LPP +     PNYQLA
Subjt:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

A0A5A7UW56 Transcription initiation factor TFIID subunit 9 isoform X23.8e-2065.85Show/hide
Query:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGI LPP +     PNYQLA
Subjt:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

A0A6J1CSB1 transcription initiation factor TFIID subunit 94.6e-3455.06Show/hide
Query:  MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------------QARLLCDGVT
        MSRG GGGYDNQNT FS EARP ++GERGS+E+TEG++DLPRDA+I     +SM                                    +A + CD V 
Subjt:  MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------------QARLLCDGVT

Query:  LAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        LA QSKVNFSFS+P PREVLLELARNRNKIPLPR+IGGPGI LPP       PNYQLA
Subjt:  LAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

A0A6J1GPP8 transcription initiation factor TFIID subunit 95.7e-3254.19Show/hide
Query:  GNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAF
        G GGGYDNQNT FS EARP ++G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD V LA 
Subjt:  GNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAF

Query:  QSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGI LPP +     PNYQLA
Subjt:  QSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

A0A6J1JZ27 transcription initiation factor TFIID subunit 93.1e-3052.9Show/hide
Query:  GNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAF
        G GGGYDNQNT FS EAR  ++G+RG +E++EG++DLPRDA+I  T  +SM                                    +A + CD V LA 
Subjt:  GNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAF

Query:  QSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA
        QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGI LPP       PNYQLA
Subjt:  QSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLA

SwissProt top hitse value%identityAlignment
Q09869 Transcription initiation factor TFIID subunit 91.7e-0938.46Show/hide
Query:  QDLPRDAKI--EFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLAEATSRN
        Q L +D+++  E +R   A +  + V LA  S++N SF+ P P+E LLELA  RN+ PLP+     G  LPP K   + PN+ ++  T +N
Subjt:  QDLPRDAKI--EFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQLAEATSRN

Q16594 Transcription initiation factor TFIID subunit 91.4e-0841.56Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL
        DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G  LPP +   + PNY+L
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL

Q17QQ4 Transcription initiation factor TFIID subunit 91.4e-0841.56Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL
        DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G  LPP +   + PNY+L
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL

Q8VI33 Transcription initiation factor TFIID subunit 91.4e-0841.56Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL
        DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G  LPP +   + PNY+L
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL

Q9SYH2 Transcription initiation factor TFIID subunit 94.1e-1959.74Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL
        DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELA +RNKIPLP+SI GPG+ LPP +     PNYQL
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL

Arabidopsis top hitse value%identityAlignment
AT1G54140.1 TATA binding protein associated factor 21kDa subunit2.9e-2059.74Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL
        DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELA +RNKIPLP+SI GPG+ LPP +     PNYQL
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKTHCSGPNYQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCGTGGAAATGGAGGTGGATATGACAACCAAAACACCATTTTCTCGCGCGAAGCTCGACCTTTACGAGTAGGTGAAAGGGGCAGTGAGGAAATAACTGAGGGAGA
GCAGGACCTGCCAAGGGATGCAAAGATTGAGTTTACTCGGAGCATGCAGGCAAGGCTGCTATGTGATGGTGTGACGCTTGCTTTCCAGTCAAAAGTTAATTTCAGCTTCT
CACGACCTTCTCCGAGAGAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATACCATTGCCAAGGTCCATTGGTGGGCCTGGTATCACCCTTCCACCCATCAAGACA
CATTGCTCTGGTCCCAACTATCAACTGGCAGAAGCAACCAGTCGAAACCATGGAGGGGCCTTCTGGGGTAAGGTAGTAGAACAAGGGGTTCGTCTCGGAGGAGGATCAAC
CTGA
mRNA sequenceShow/hide mRNA sequence
ACTTGGAGGAGAGGAGACGAGAACGAAGAACAGCGTATCGGCTTCGAAGCAAATCCATGAAGCTCTGACTGAAACATGAATTACAAAATTTTTAGGGCAAGGAATTCTGT
TGTTTAGATTCTAGAGAAGATGAGTCGTGGAAATGGAGGTGGATATGACAACCAAAACACCATTTTCTCGCGCGAAGCTCGACCTTTACGAGTAGGTGAAAGGGGCAGTG
AGGAAATAACTGAGGGAGAGCAGGACCTGCCAAGGGATGCAAAGATTGAGTTTACTCGGAGCATGCAGGCAAGGCTGCTATGTGATGGTGTGACGCTTGCTTTCCAGTCA
AAAGTTAATTTCAGCTTCTCACGACCTTCTCCGAGAGAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATACCATTGCCAAGGTCCATTGGTGGGCCTGGTATCAC
CCTTCCACCCATCAAGACACATTGCTCTGGTCCCAACTATCAACTGGCAGAAGCAACCAGTCGAAACCATGGAGGGGCCTTCTGGGGTAAGGTAGTAGAACAAGGGGTTC
GTCTCGGAGGAGGATCAACCTGAAAGAGGAGGTTGCTTGGTCCTCTTGTGCCACCTTTTTGAGATCGCCATTCGCAAGAAAGGAGGAGTGTTTTCCTTGATCGATTTTGC
TATGACCCCATTGAAGAAAAAAGAGAGTCGAGTCTAGAGTGACACGAAGGAGAACGAAAGCGCCAACCCTGATCCCTTTCGGTTGGTTGTTTCACACTTTCCTCCCAACT
TCCCCAATTAAAAAGGTGCTTTGAAACTTCACATTCTAATATATATGAACAAGATCTATTGTATAATAACGAGCTTTGTTTCTATTTGGTAAAAGAATTCAGTGGTTCTG
TTTCCACCATGTGTCCATTCCAATAGAATCTGAATCATTAGAATGTGGATATTCAATTCCCACATTCTTGGACAAAATTACATGACAGGTCTAGAAGAGAAAAATCT
Protein sequenceShow/hide protein sequence
MSRGNGGGYDNQNTIFSREARPLRVGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGITLPPIKT
HCSGPNYQLAEATSRNHGGAFWGKVVEQGVRLGGGST