; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G008670 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G008670
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationCmo_Chr08:5600911..5607326
RNA-Seq ExpressionCmoCh08G008670
SyntenyCmoCh08G008670
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsIPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3558718.1 hypothetical protein F2Q69_00015872 [Brassica cretica]9.4e-1565.79Show/hide
Query:  QQRSLHVQVKDLITEIKRTLT-QP-SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        Q+R  H + K L   I R +  QP SSFYE QTGE+IL+A E L LRETIT+VYVQRTGKP+WVVSEDMERD F+S
Subjt:  QQRSLHVQVKDLITEIKRTLT-QP-SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

YP_009262315.1 clp protease proteolytic subunit [Spondias tuberosa]1.0e-1371.67Show/hide
Query:  EIKRTLTQPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        EI + L  P +FYE QTGE IL+A E L LRET+T+VYVQRTGKPLWVVSEDMERD F+S
Subjt:  EIKRTLTQPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

YP_009447475.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita maxima]1.7e-1694.12Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYEGQTGELIL+AGE LTLRETITKVYVQRTGKPLWVVSEDMERDAF+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

YP_009447560.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita moschata]1.7e-1694.12Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYEGQTGELIL+AGE LTLRETITKVYVQRTGKPLWVVSEDMERDAF+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

YP_009505105.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita pepo]1.7e-1694.12Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYEGQTGELIL+AGE LTLRETITKVYVQRTGKPLWVVSEDMERDAF+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

TrEMBL top hitse value%identityAlignment
A0A1X9ZER4 ATP-dependent Clp protease proteolytic subunit5.0e-1458.02Show/hide
Query:  DIHSQQRSLHVQVKDLIT---EIKRTLTQPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        D+H+    L   +   I    EI + L  P +FYE QTGE IL+A E L LRET+T+VYVQRTGKPLWVVSEDMERD F+S
Subjt:  DIHSQQRSLHVQVKDLIT---EIKRTLTQPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A0A2H4T1Y8 ATP-dependent Clp protease proteolytic subunit8.3e-1794.12Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYEGQTGELIL+AGE LTLRETITKVYVQRTGKPLWVVSEDMERDAF+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A0A2H4T274 ATP-dependent Clp protease proteolytic subunit8.3e-1794.12Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYEGQTGELIL+AGE LTLRETITKVYVQRTGKPLWVVSEDMERDAF+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A0A344AXP4 ATP-dependent Clp protease proteolytic subunit8.3e-1794.12Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYEGQTGELIL+AGE LTLRETITKVYVQRTGKPLWVVSEDMERDAF+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A0A6M8NPI2 ATP-dependent Clp protease proteolytic subunit5.0e-1458.02Show/hide
Query:  DIHSQQRSLHVQVKDLIT---EIKRTLTQPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        D+H+    L   +   I    EI + L  P +FYE QTGE IL+A E L LRET+T+VYVQRTGKPLWVVSEDMERD F+S
Subjt:  DIHSQQRSLHVQVKDLIT---EIKRTLTQPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

SwissProt top hitse value%identityAlignment
A4QJE0 ATP-dependent Clp protease proteolytic subunit1.5e-1580.39Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYE QTGE IL+A E L LRETIT+VYVQRTGKP+WVVSEDMERD F+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A4QJM4 ATP-dependent Clp protease proteolytic subunit1.5e-1580.39Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYE QTGE IL+A E L LRETIT+VYVQRTGKP+WVVSEDMERD F+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A4QKD0 ATP-dependent Clp protease proteolytic subunit1.5e-1580.39Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYE QTGE IL+A E L LRETIT+VYVQRTGKP+WVVSEDMERD F+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

A4QKL7 ATP-dependent Clp protease proteolytic subunit1.5e-1580.39Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYE QTGE IL+A E L LRETIT+VYVQRTGKP+WVVSEDMERD F+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

Q49KX3 ATP-dependent Clp protease proteolytic subunit8.8e-1682.35Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYE QTGE IL+A E L LRETIT+VYVQRTGKPLWVVSEDMERD F+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

Arabidopsis top hitse value%identityAlignment
AT5G23140.1 nuclear-encoded CLP protease P77.9e-0433.96Show/hide
Query:  QPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        QPS  Y GQ  ++ +   + + + + + ++YV+ TG+PL VV+ +M+RD F++
Subjt:  QPSSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS

ATCG00670.1 plastid-encoded CLP P1.4e-1678.43Show/hide
Query:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS
        SSFYE QTGE IL+A E L LRETIT+VYVQRTGKP+WV+SEDMERD F+S
Subjt:  SSFYEGQTGELILKAGERLTLRETITKVYVQRTGKPLWVVSEDMERDAFIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTAAGATTAGCTCATAAAAAGTTTTCATTTTCTGATAATGTTCTTGTTAGAACATCATTTGATAATGTTCTTGTTTCTGAAAAGAAAGAGCAAGAAATATTCAG
GCAACGGATACCACACGAGGAGGAAAACGATGTGGAACAAATCACTTGTATTGACCAGGTGGCTGATGCAGAGGATAAGCCGGTGGCGGATAGTCTTCAGCACGAGGAGG
AGGTGGGTAGCCTTGAGTCGGGGGAGGAGACGAGAAGCCTTGACCTGGGGGAGGAGGCGGGTAGCCTTGAGCCGAGGGAGGGGGCGGGTAGCCTTGAGCCGAGGGAGGGG
GCGGGTAGCCTTGTGTTGGGGGAGGGGATGCGTAGCCTTGAGCCAGGGGAGGTGGCGGGTAGCCTTGAGCCGAGGGAGGGGGTGGGTAGCCTTGAACATATGGAGGGGGT
GGGTGTCCAAAGGGTTGTCCATACATCGGAGGAGGATATCCGACTGGACCGGGGATCGATTAACCAAAGGATTCAGCAATGGTACACACTTTATCTTGTGGTAAAATTAC
AAACCTTCGCCGAAAATACCTCGACATATCGTCATAAAGAGCTCGTTTTCGCAGAAGAATACCCTGTAGCAAATAAACCAATAGCCGCCATTGTTAACCCTTTGGAAAGG
AACAGAGCTAGAGAAAGAAATGGTGCCCGTGAGATCCGTATGCCAGAAATTTCTGTAATCCTGACGAAGCTGCATTTTCTCAAGGTAATCGGCATGCGACGCCATGGTCA
GGTTGCGGATGAACCACTTCAGAAAGGATTCGAAGCTAAATCTCGAAGATCAATATGGAAATCTAAAGATATTCACAGTCAACAACGGAGCTTGCACGTTCAGGTGAAAG
ATCTAATTACAGAGATCAAACGAACTTTGACCCAACCTAGTTCTTTTTATGAGGGACAAACAGGAGAATTGATCCTGAAAGCGGGAGAACGACTGACGCTGCGCGAAACC
ATCACAAAGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGATATGGAAAGAGATGCTTTTATCTCACTTCATTCCCTTGCAATTGCATCAATAAA
TACCACTATTTTTACCACTTCTCATACAATCGCATACCTCTTAGCTCGCCATACATATGATCAGGTCGAAAGCCCATGCATGCATCAAGGGCCTCGCGTGCACGTCAATA
GGTCATGTGTGCCCATCAACCTACAATTGCGCACATGTTTCAACATGCCACGAGTAGTCATTTCAGGCCCAACAATGCATACCTTCACCGCCCATGTTCCGCCCATGTTC
GCACGCCTTTGCAGTTATTCACTGGCTCGCCCAGGCACAAAATCTACCCCGCACACATCCATTAATGTATGTTCAAACCAAGACGATGTAACATTCAACCCACCAACCTC
ATGCACATCTCGAAAGCGCGCCCAAGCCAACATCATGCGGTGCCCAACCCACCAAATCCTTGCACACCCACATGTGAACGCCGTCGTGCCCAACAAGTGTGCCCACCAGC
CCACAACCACGCTCACCAGTAATGTTGTGACTTGTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTAAGATTAGCTCATAAAAAGTTTTCATTTTCTGATAATGTTCTTGTTAGAACATCATTTGATAATGTTCTTGTTTCTGAAAAGAAAGAGCAAGAAATATTCAG
GCAACGGATACCACACGAGGAGGAAAACGATGTGGAACAAATCACTTGTATTGACCAGGTGGCTGATGCAGAGGATAAGCCGGTGGCGGATAGTCTTCAGCACGAGGAGG
AGGTGGGTAGCCTTGAGTCGGGGGAGGAGACGAGAAGCCTTGACCTGGGGGAGGAGGCGGGTAGCCTTGAGCCGAGGGAGGGGGCGGGTAGCCTTGAGCCGAGGGAGGGG
GCGGGTAGCCTTGTGTTGGGGGAGGGGATGCGTAGCCTTGAGCCAGGGGAGGTGGCGGGTAGCCTTGAGCCGAGGGAGGGGGTGGGTAGCCTTGAACATATGGAGGGGGT
GGGTGTCCAAAGGGTTGTCCATACATCGGAGGAGGATATCCGACTGGACCGGGGATCGATTAACCAAAGGATTCAGCAATGGTACACACTTTATCTTGTGGTAAAATTAC
AAACCTTCGCCGAAAATACCTCGACATATCGTCATAAAGAGCTCGTTTTCGCAGAAGAATACCCTGTAGCAAATAAACCAATAGCCGCCATTGTTAACCCTTTGGAAAGG
AACAGAGCTAGAGAAAGAAATGGTGCCCGTGAGATCCGTATGCCAGAAATTTCTGTAATCCTGACGAAGCTGCATTTTCTCAAGGTAATCGGCATGCGACGCCATGGTCA
GGTTGCGGATGAACCACTTCAGAAAGGATTCGAAGCTAAATCTCGAAGATCAATATGGAAATCTAAAGATATTCACAGTCAACAACGGAGCTTGCACGTTCAGGTGAAAG
ATCTAATTACAGAGATCAAACGAACTTTGACCCAACCTAGTTCTTTTTATGAGGGACAAACAGGAGAATTGATCCTGAAAGCGGGAGAACGACTGACGCTGCGCGAAACC
ATCACAAAGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGATATGGAAAGAGATGCTTTTATCTCACTTCATTCCCTTGCAATTGCATCAATAAA
TACCACTATTTTTACCACTTCTCATACAATCGCATACCTCTTAGCTCGCCATACATATGATCAGGTCGAAAGCCCATGCATGCATCAAGGGCCTCGCGTGCACGTCAATA
GGTCATGTGTGCCCATCAACCTACAATTGCGCACATGTTTCAACATGCCACGAGTAGTCATTTCAGGCCCAACAATGCATACCTTCACCGCCCATGTTCCGCCCATGTTC
GCACGCCTTTGCAGTTATTCACTGGCTCGCCCAGGCACAAAATCTACCCCGCACACATCCATTAATGTATGTTCAAACCAAGACGATGTAACATTCAACCCACCAACCTC
ATGCACATCTCGAAAGCGCGCCCAAGCCAACATCATGCGGTGCCCAACCCACCAAATCCTTGCACACCCACATGTGAACGCCGTCGTGCCCAACAAGTGTGCCCACCAGC
CCACAACCACGCTCACCAGTAATGTTGTGACTTGTGCTTAG
Protein sequenceShow/hide protein sequence
MSLRLAHKKFSFSDNVLVRTSFDNVLVSEKKEQEIFRQRIPHEEENDVEQITCIDQVADAEDKPVADSLQHEEEVGSLESGEETRSLDLGEEAGSLEPREGAGSLEPREG
AGSLVLGEGMRSLEPGEVAGSLEPREGVGSLEHMEGVGVQRVVHTSEEDIRLDRGSINQRIQQWYTLYLVVKLQTFAENTSTYRHKELVFAEEYPVANKPIAAIVNPLER
NRARERNGAREIRMPEISVILTKLHFLKVIGMRRHGQVADEPLQKGFEAKSRRSIWKSKDIHSQQRSLHVQVKDLITEIKRTLTQPSSFYEGQTGELILKAGERLTLRET
ITKVYVQRTGKPLWVVSEDMERDAFISLHSLAIASINTTIFTTSHTIAYLLARHTYDQVESPCMHQGPRVHVNRSCVPINLQLRTCFNMPRVVISGPTMHTFTAHVPPMF
ARLCSYSLARPGTKSTPHTSINVCSNQDDVTFNPPTSCTSRKRAQANIMRCPTHQILAHPHVNAVVPNKCAHQPTTTLTSNVVTCA