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CmoCh08G008800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G008800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBeta-amylase
Genome locationCmo_Chr08:5704363..5705303
RNA-Seq ExpressionCmoCh08G008800
SyntenyCmoCh08G008800
Gene Ontology termsGO:0000272 - polysaccharide catabolic process (biological process)
GO:0010468 - regulation of gene expression (biological process)
GO:0016161 - beta-amylase activity (molecular function)
GO:0102229 - amylopectin maltohydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593667.1 Beta-amylase 7, partial [Cucurbita argyrosperma subsp. sororia]6.4e-4897.94Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVI AREFSELRFGSENFEEISWFQALETCVPSAGAGR CAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

KAG7026001.1 hypothetical protein SDJN02_12499 [Cucurbita argyrosperma subsp. argyrosperma]2.8e-5191.23Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREF---------SELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQA
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVI AREF         SELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQA
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREF---------SELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQA

Query:  HSGSGTIWNTLSGQ
        HSGSGTIWNTLSGQ
Subjt:  HSGSGTIWNTLSGQ

XP_022964580.1 beta-amylase 7-like isoform X1 [Cucurbita moschata]4.4e-4190.72Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS    G     EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

XP_022964581.1 beta-amylase 7-like isoform X2 [Cucurbita moschata]4.4e-4190.72Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS    G     EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

XP_022964593.1 beta-amylase 7-like isoform X6 [Cucurbita moschata]4.4e-4190.72Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS    G     EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

TrEMBL top hitse value%identityAlignment
A0A6J1HI67 Beta-amylase4.8e-4189.69Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS          EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

A0A6J1HI70 Beta-amylase1.0e-06100Show/hide
Query:  MKIKRDVLKCTFSCQLCREVQAHSGSGT
        MKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MKIKRDVLKCTFSCQLCREVQAHSGSGT

A0A6J1HJC8 Beta-amylase2.1e-4190.72Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS    G     EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

A0A6J1HL80 Beta-amylase2.1e-4190.72Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS    G     EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

A0A6J1HLB5 Beta-amylase2.1e-4190.72Show/hide
Query:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
        MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFS    G     EISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT
Subjt:  MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCTTGATTCTTCTCCGGTCGAACCATGCCTGGTTGACGGAAAATCGATTCTGAAGTATCTCGCCTTTCGCTGGAAAGGTTTCGTCATTTTCGCCAGAGAATTTTC
AGAACTGAGATTTGGAAGTGAAAATTTTGAAGAAATCAGTTGGTTTCAGGCTTTGGAGACATGCGTGCCTTCTGCTGGTGCTGGTAGAGCTTGTGCGATGAAAATCAAAC
GTGACGTACTTAAGTGTACTTTTTCCTGCCAGCTTTGTAGAGAAGTCCAAGCGCATAGTGGTAGTGGTACCATATGGAACACGTTATCTGGACAATAA
mRNA sequenceShow/hide mRNA sequence
CGCCTCATTCGTGCCACACATCCACACGCGCGCGCGTGCGAAGATCCTCCTCCTCGCATGCTCGCACGTTTGAGAATCAATCTCTCTCTCTTTCTCGCCGGACCAGTGAA
TCGCCGTGGACTGTCGAACCCATGTTCCTTGATTCTTCTCCGGTCGAACCATGCCTGGTTGACGGAAAATCGATTCTGAAGTATCTCGCCTTTCGCTGGAAAGGTTTCGT
CATTTTCGCCAGAGAATTTTCAGAACTGAGATTTGGAAGTGAAAATTTTGAAGAAATCAGTTGGTTTCAGGCTTTGGAGACATGCGTGCCTTCTGCTGGTGCTGGTAGAG
CTTGTGCGATGAAAATCAAACGTGACGTACTTAAGTGTACTTTTTCCTGCCAGCTTTGTAGAGAAGTCCAAGCGCATAGTGGTAGTGGTACCATATGGAACACGTTATCT
GGACAATAA
Protein sequenceShow/hide protein sequence
MFLDSSPVEPCLVDGKSILKYLAFRWKGFVIFAREFSELRFGSENFEEISWFQALETCVPSAGAGRACAMKIKRDVLKCTFSCQLCREVQAHSGSGTIWNTLSGQ