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CmoCh08G009050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G009050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUbiquitin-related modifier 1 homolog
Genome locationCmo_Chr08:5893941..5896209
RNA-Seq ExpressionCmoCh08G009050
SyntenyCmoCh08G009050
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0034227 - tRNA thio-modification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0031386 - protein tag (molecular function)
InterPro domainsIPR012675 - Beta-grasp domain superfamily
IPR015221 - Ubiquitin-related modifier 1
IPR016155 - Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593693.1 Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4997.98Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHN+SINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_022964356.1 ubiquitin-related modifier 1 homolog 2 [Cucurbita moschata]3.8e-50100Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_022999845.1 ubiquitin-related modifier 1 homolog 2 [Cucurbita maxima]5.4e-4996.97Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHN+SINPENG GKLVMKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_023514461.1 ubiquitin-related modifier 1 homolog 2 [Cucurbita pepo subsp. pepo]1.6e-4896.97Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHN+SIN ENGAGKLVMKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

XP_038876423.1 ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida]6.0e-4893.94Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHN+SI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

TrEMBL top hitse value%identityAlignment
A0A1S3CCC7 Ubiquitin-related modifier 1 homolog1.1e-4792.93Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLC+SVKIHN+SI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1H5M9 Ubiquitin-related modifier 1 homolog5.5e-4791.92Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH++S++PENGAG L+MKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1HIP6 Ubiquitin-related modifier 1 homolog1.8e-50100Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1KGQ8 Ubiquitin-related modifier 1 homolog2.6e-4996.97Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHN+SINPENG GKLVMKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1KZL7 Ubiquitin-related modifier 1 homolog5.5e-4791.92Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH++S++PENGAG L+MKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

SwissProt top hitse value%identityAlignment
A0MDQ1 Ubiquitin-related modifier 1 homolog 16.7e-4280.2Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG
        MQLTLEFGGGLELLCDS KIH ++++  NGA      MK LLSWVR+NLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG

Query:  G
        G
Subjt:  G

B3H7G2 Ubiquitin-related modifier 1 homolog 21.4e-4484.85Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQ TLEFGGGLELLCDSVKIH ++IN  N +  L MKDLLSWVR+NLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B6SXH2 Ubiquitin-related modifier 1 homolog3.2e-3671.29Show/hide
Query:  MQLTLEFGGGLELLCD-SVKIHNISI-NPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG
        M LTLEFGGGLELL + S K+H + +  P++G GK+ MK LLSWV+ NLIKERPEMF+K ++VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHG
Subjt:  MQLTLEFGGGLELLCD-SVKIHNISI-NPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG

Query:  G
        G
Subjt:  G

Q0D6M1 Ubiquitin-related modifier 1 homolog9.0e-3974Show/hide
Query:  MQLTLEFGGGLELLCD-SVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        M LTLEFGGGLELL + S K+H + + P +G GK+VMK LL+WV+SNLIKERPEMF+KG++VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCD-SVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q7GBC8 Ubiquitin-related modifier 1 homolog9.0e-3974Show/hide
Query:  MQLTLEFGGGLELLCD-SVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        M LTLEFGGGLELL + S K+H + + P +G GK+VMK LL+WV+SNLIKERPEMF+KG++VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCD-SVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Arabidopsis top hitse value%identityAlignment
AT2G45695.1 Ubiquitin related modifier 14.7e-4380.2Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG
        MQLTLEFGGGLELLCDS KIH ++++  NGA      MK LLSWVR+NLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG

Query:  G
        G
Subjt:  G

AT3G61113.1 Ubiquitin related modifier 11.0e-4584.85Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        MQ TLEFGGGLELLCDSVKIH ++IN  N +  L MKDLLSWVR+NLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTAACCCTTGAATTTGGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATATCAGCATCAATCCTGAAAATGGAGCGGGAAAGTTGGTCATGAA
AGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCGGAAATGTTTATGAAAGGCAACACCGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATT
GGGAGCTGAGCGGGCAGCTTGACACAACATTAGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTCTGTAGGGTTTTAGGGTTCCGGTGAAGAAAATTGAAAATGCAACTAACCCTTGAATTTGGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATAT
CAGCATCAATCCTGAAAATGGAGCGGGAAAGTTGGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCGGAAATGTTTATGAAAGGCAACA
CCGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTAGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTG
CATGGAGGCTAACTTCATCAGGAATGTCTTTATCTGCTTCTATCTACTAAATACTTGTCTAAGATGATATGATATGGTACTTTAGGCCATTTTAACCTTAAAAATCTGCA
TTTTTCCCCGAAATTCGTCCGACCATATGATAATCAGATTTTGCACGATGTTGAATAACTGAATAAAAGTGGCTACTAATTACAAAAGTTAATGGTTCGATTTTCCA
Protein sequenceShow/hide protein sequence
MQLTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG