; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G009570 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G009570
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationCmo_Chr08:6214237..6216575
RNA-Seq ExpressionCmoCh08G009570
SyntenyCmoCh08G009570
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6997.96Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIK  GAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LNNLQNPANKRQINCDEKLKAIF GRENVGFLEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]4.5e-6895.92Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K  GAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LNNLQNPANKRQINCDEKLKAIF GRENVG LEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]2.9e-6794.56Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K  GAAASRKKSEAGEKKEGNRSGGI KSVQVSPALAGFLGMSESSR+EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIF GRENVG LEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

XP_023000111.1 upstream activation factor subunit spp27-like [Cucurbita maxima]6.6e-6793.88Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K  GAAA+RKKSEAGEKKEGNRSGGI KSVQVSPALAGFLGMSESSR+EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIF GRENVG LEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

XP_023514456.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]1.4e-6492.52Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG++K  GAAASRK SEAGEKKE NRSGGI KSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LNNLQNPANKRQINCDEKLKAIF GRENVG LEIGKLLS HFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein4.5e-4571.03Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  +K   AA S +KS+   KK  N SGG+LK+ +VSP LAGFLG SE +R EAVKQIW YIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS
        LNNLQNP +KRQI CD KLKAIFGGRE VG LEI K LS HFVKS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS

A0A1S3CBA0 protein TRI1-like3.9e-4973.1Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K   AA S +KS+A  K++ N SGGI+KS++VSP LAGFLG SE SRA+A+KQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS
        LNNLQN  +KRQINCD KLKAIFGGRE VG LEI K LSPHFVKS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS

A0A5D3DMJ2 Protein TRI1-like3.9e-4973.1Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K   AA S +KS+A  K++ N SGGI+KS++VSP LAGFLG SE SRA+A+KQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS
        LNNLQN  +KRQINCD KLKAIFGGRE VG LEI K LSPHFVKS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS

A0A6J1KEZ2 upstream activation factor subunit spp27-like3.2e-6793.88Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K  GAAA+RKKSEAGEKKEGNRSGGI KSVQVSPALAGFLGMSESSR+EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIF GRENVG LEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

A0A6J1KHF5 upstream activation factor subunit spp27-like1.4e-6794.56Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K  GAAASRKKSEAGEKKEGNRSGGI KSVQVSPALAGFLGMSESSR+EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIF GRENVG LEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS

SwissProt top hitse value%identityAlignment
O02101 SWI/SNF chromatin-remodeling accessory subunit 23.7e-0437.74Show/hide
Query:  QVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFG
        ++ P LA  LG++  +R + ++ +W YIK + LQ+P  +  INCD  L   FG
Subjt:  QVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFG

O74503 Upstream activation factor subunit spp273.4e-1039.22Show/hide
Query:  KTKGAAASRKKSEAGEK--------KEGNRSGG------------ILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKA
        KTKG  A+   +E G+K        KE    GG            + K +++SP LA FLG+ + SR + VK++W YIK ++LQ+P +KR I CD+KLK+
Subjt:  KTKGAAASRKKSEAGEK--------KEGNRSGG------------ILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKA

Query:  IF
        +F
Subjt:  IF

Q05024 Protein TRI15.9e-1037Show/hide
Query:  KTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPH
        K KG + S+ K +  +    + +   ++ V +S  L  FLG  E  R + VK IW YIK ++LQNP ++R+I CDEK++ IFG  + +    + KLL+ H
Subjt:  KTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPH

Q08747 Upstream activation factor subunit UAF301.8e-1136.52Show/hide
Query:  SSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENV
        S  ++   K + +TKG    +KK    +     R       V +S +LA  LG  E +R E V+++W+YIK +NLQNP NK++I CDEKL+ I G   N+
Subjt:  SSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENV

Query:  GFLEIGKLLSPHFVK
           E+ K+L+ H  +
Subjt:  GFLEIGKLLSPHFVK

Q9FMT4 SWI/SNF complex component SNF12 homolog2.8e-0431.37Show/hide
Query:  EIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLS
        EIK KG     ++  A  + E N    + +  ++S AL   LG+   +R   +  IW Y+K   LQNP +    NCD  L+ +F G E + F  + + +S
Subjt:  EIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLS

Query:  PH
         H
Subjt:  PH

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein2.0e-2153Show/hide
Query:  AAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS
        AA     + AGE K      GI K+  VS  LA F G  E +R  A+K++W Y+KL+NLQNPANK++I+CD+KLK IF G++ VG  EI KLLSPHF KS
Subjt:  AAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.7e-1840.74Show/hide
Query:  TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPA
        T  FR   T L SL+          A  P  +++   A  S  +S            GI+K   VSP +   + + E +R +A+K+IW+YIK ++LQ+P 
Subjt:  TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPA

Query:  NKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFV
        NKR+I CDEKLK IF GR+ VGFLEI KL+ PHF+
Subjt:  NKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.3e-2560.42Show/hide
Query:  KKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSS
        K + +   K G +  GILK V VS  LA F+G +E SR  AVK+IW YIKLNNLQNP NKR+I CDE+LK IF G++ VGFLEI KLLS HF KS+
Subjt:  KKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSS

AT3G03590.1 SWIB/MDM2 domain superfamily protein6.4e-2850.36Show/hide
Query:  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPAN
        +FRG R+LL  + ++T+   S+ +   P  + K K     + KS++  KK   RS GI K   VSP LA FLG  E+SR +A+K IW+YIK ++LQNPA+
Subjt:  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPAN

Query:  KRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSS
        KR+I CDE LK IF G++ VGFLEI KLLSPHFVK++
Subjt:  KRQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSS

AT4G34290.1 SWIB/MDM2 domain superfamily protein5.4e-1949.5Show/hide
Query:  TKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHF
        T  AAAS   +   + +E     GI+K   VS A+   +G+ E  R +A+K+IW+YIK ++LQ+P NKR I CDEKLK IF G+E VGFLEI KL+ PHF
Subjt:  TKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFGGRENVGFLEIGKLLSPHF

Query:  V
        +
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCC
CAAGGGGGAGATAAAAACTAAAGGTGCCGCTGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTCGGGGGGGATTCTTAAGTCCGTCCAGGTTT
CTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTGCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAG
AGGCAGATCAATTGTGATGAAAAGCTAAAGGCTATATTTGGTGGAAGAGAGAATGTGGGATTCTTAGAGATCGGAAAATTGCTATCCCCTCATTTTGTGAAGTCGTCTAG
TTGA
mRNA sequenceShow/hide mRNA sequence
CAGTGGCACCGGAAGTCCAATCACATGGGCCGAAACCAAGGGAAGCCCATTTCTATTGGGCCCCCAATTTCTTGTGCTCAGTCTAAAAGCTCCATTTCCCCTCTTCGGCT
CAGTCTCAGACTCTCAGTCGATCAAAAGCGGCAAAAGAACCCTGAAGTTCGAACCCAAGCGCCGTCTTCCCCGGAGCAAAATGGCGTCAGGTCTTAACAATGGCACTAGG
TTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCCCAAGGGGGAGATAAAAACTAAAGGTGCCGC
TGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTCGGGGGGGATTCTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGT
CCGAGTCTTCGCGTGCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAG
GCTATATTTGGTGGAAGAGAGAATGTGGGATTCTTAGAGATCGGAAAATTGCTATCCCCTCATTTTGTGAAGTCGTCTAGTTGA
Protein sequenceShow/hide protein sequence
MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTKGAAASRKKSEAGEKKEGNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANK
RQINCDEKLKAIFGGRENVGFLEIGKLLSPHFVKSSS