; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G009580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G009580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationCmo_Chr08:6217516..6220884
RNA-Seq ExpressionCmoCh08G009580
SyntenyCmoCh08G009580
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]4.1e-6996.6Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIK SG AASRKKSEAGEKKEGNR GGILKSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LNNLQNPANKRQINCDEKLKAIFDGRENVG LEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]2.8e-7097.28Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K SG AASRKKSEAGEKKEGNR GGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]2.7e-6895.24Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K SG AASRKKSEAGEKKEGNR GGI KSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

XP_023000111.1 upstream activation factor subunit spp27-like [Cucurbita maxima]5.9e-6894.56Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K SG AA+RKKSEAGEKKEGNR GGI KSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

XP_023514456.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]8.6e-6793.88Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG++K SG AASRK SEAGEKKE NR GGI KSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLS HFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein2.9e-4469.66Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  +K S  A S +KS+   KK  N  GG+LK+ +VSP LAGFLG SE +R EAVKQIW YIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS
        LNNLQNP +KRQI CD KLKAIF GRE VG+LEI K LS HFVKS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS

A0A1S3CBA0 protein TRI1-like2.1e-4770.34Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K    A S +KS+A  K++ N  GGI+KS++VSP LAGFLG SE SR +A+KQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS
        LNNLQN  +KRQINCD KLKAIF GRE VG+LEI K LSPHFVKS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS

A0A5D3DMJ2 Protein TRI1-like2.1e-4770.34Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K    A S +KS+A  K++ N  GGI+KS++VSP LAGFLG SE SR +A+KQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS
        LNNLQN  +KRQINCD KLKAIF GRE VG+LEI K LSPHFVKS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS

A0A6J1KEZ2 upstream activation factor subunit spp27-like2.9e-6894.56Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K SG AA+RKKSEAGEKKEGNR GGI KSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

A0A6J1KHF5 upstream activation factor subunit spp27-like1.3e-6895.24Show/hide
Query:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK
        MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGE+K SG AASRKKSEAGEKKEGNR GGI KSVQVSPALAGFLGMSESSR EAVKQIWSYIK
Subjt:  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIK

Query:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
        LN+LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS
Subjt:  LNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp275.3e-1138.83Show/hide
Query:  KTSGVAASRKKSEAGEK--------KEGNRLGG------------ILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKA
        KT G  A+   +E G+K        KE    GG            + K +++SP LA FLG+ + SRP+ VK++W YIK ++LQ+P +KR I CD+KLK+
Subjt:  KTSGVAASRKKSEAGEK--------KEGNRLGG------------ILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKA

Query:  IFD
        +F+
Subjt:  IFD

Q05024 Protein TRI12.2e-0935Show/hide
Query:  KTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPH
        K    + S++K +  +  + N +   ++ V +S  L  FLG  E  R + VK IW YIK ++LQNP ++R+I CDEK++ IF   + + +  + KLL+ H
Subjt:  KTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPH

Q08747 Upstream activation factor subunit UAF302.0e-1033.91Show/hide
Query:  SSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENV
        S  ++   K + +T G    +KK    +     R       V +S +LA  LG  E +R E V+++W+YIK +NLQNP NK++I CDEKL+ I    ++ 
Subjt:  SSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENV

Query:  GILEIGKLLSPHFVK
         + E+ K+L+ H  +
Subjt:  GILEIGKLLSPHFVK

Q9FMT4 SWI/SNF complex component SNF12 homolog1.5e-0534.29Show/hide
Query:  QVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPH
        ++S AL   LG+   +RP  +  IW Y+K   LQNP +    NCD  L+ +F G E +    + + +S H
Subjt:  QVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPH

Q9P7S3 SWI/SNF and RSC complexes subunit ssr31.1e-0531.82Show/hide
Query:  PKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFD
        P     ++G+  +RK  ++ + K         +  ++S A A  LG+ E +RP+ V  +W YIK + LQ+   KR INCD+ L+ +F+
Subjt:  PKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFD

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein6.2e-2358.24Show/hide
Query:  AGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS
        AGE K      GI K+  VS  LA F G  E +R  A+K++W Y+KL+NLQNPANK++I+CD+KLK IFDG++ VGI EI KLLSPHF KS
Subjt:  AGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.7e-1840.88Show/hide
Query:  TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRL--GGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQN
        T  FR   T L SL+          A  P  +++   V A    +E+ E    N+    GI+K   VSP +   + + E +R +A+K+IW+YIK ++LQ+
Subjt:  TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRL--GGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQN

Query:  PANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFV
        P NKR+I CDEKLK IF+GR+ VG LEI KL+ PHF+
Subjt:  PANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.5e-2459.38Show/hide
Query:  KKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSS
        K + +   K G +  GILK V VS  LA F+G +E SR  AVK+IW YIKLNNLQNP NKR+I CDE+LK IF G++ VG LEI KLLS HF KS+
Subjt:  KKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSS

AT3G03590.1 SWIB/MDM2 domain superfamily protein9.2e-2748.18Show/hide
Query:  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPAN
        +FRG R+LL  + ++T+   S+ +   P  + K       + KS++  KK   R  GI K   VSP LA FLG  E+SR +A+K IW+YIK ++LQNPA+
Subjt:  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPAN

Query:  KRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSS
        KR+I CDE LK IF+G++ VG LEI KLLSPHFVK++
Subjt:  KRQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSS

AT4G34290.1 SWIB/MDM2 domain superfamily protein3.2e-1948.51Show/hide
Query:  TSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHF
        TS  AAS   +   + +E     GI+K   VS A+   +G+ E  R +A+K+IW+YIK ++LQ+P NKR I CDEKLK IF+G+E VG LEI KL+ PHF
Subjt:  TSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSPHF

Query:  V
        +
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCTACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCC
CAAGGGGGAGATAAAAACTTCAGGTGTCGCTGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTTGGGGGGGATTCTTAAGTCCGTCCAGGTTT
CTCCGGCTCTCGCTGGCTTCCTCGGCATGTCAGAGTCTTCGCGTCCTGAAGCCGTCAAACAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAG
AGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCACTTTGTGAAGTCGTCTAG
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCTACCACTCAAGCTTACTCTTCTGCGGCTGCGGTTTCTCC
CAAGGGGGAGATAAAAACTTCAGGTGTCGCTGCTTCCCGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGGGAATCGTTTGGGGGGGATTCTTAAGTCCGTCCAGGTTT
CTCCGGCTCTCGCTGGCTTCCTCGGCATGTCAGAGTCTTCGCGTCCTGAAGCCGTCAAACAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAG
AGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCCCTCACTTTGTGAAGTCGTCTAG
TTAA
Protein sequenceShow/hide protein sequence
MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKTSGVAASRKKSEAGEKKEGNRLGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANK
RQINCDEKLKAIFDGRENVGILEIGKLLSPHFVKSSS