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CmoCh08G009920 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G009920
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsmall EDRK-rich factor 2-like
Genome locationCmo_Chr08:6447261..6448326
RNA-Seq ExpressionCmoCh08G009920
SyntenyCmoCh08G009920
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007513 - Uncharacterised protein family SERF, N-terminal
IPR040211 - Small EDRK-rich factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593780.1 hypothetical protein SDJN03_13256, partial [Cucurbita argyrosperma subsp. sororia]1.1e-08100Show/hide
Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
KAG7026110.1 hypothetical protein SDJN02_12609, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-08100Show/hide
Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
PSS23971.1 Carotenoid isomerooxygenase [Actinidia chinensis var. chinensis]7.4e-0891.89Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
XP_008457241.1 PREDICTED: small EDRK-rich factor 2 [Cucumis melo]7.4e-0891.89Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
XP_023000038.1 small EDRK-rich factor 2-like [Cucurbita maxima]1.8e-0997.3Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN+GKGKSKDDGLTHEQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
TrEMBL top hitse value%identityAlignment
A0A0A0LHU5 4F5 domain-containing protein3.6e-0891.89Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
A0A1S3C551 small EDRK-rich factor 23.6e-0891.89Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
A0A2R6R8U7 Carotenoid isomerooxygenase3.6e-0891.89Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
A0A6I9ST95 small EDRK-rich factor 26.2e-0889.19Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQRE+DRERAQARN+GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
A0A6J1KLF6 small EDRK-rich factor 2-like8.6e-1097.3Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRGNQREKDRERAQARN+GKGKSKDDGLTHEQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24100.1 Uncharacterised protein family SERF1.9e-0981.08Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRG+QRE+DRERA AR  GKGK+KDDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
AT4G13615.1 Uncharacterised protein family SERF1.6e-0878.38Show/hide
Query:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER
        MTRG+QRE+DRERA AR  GKGK+ DDGLT EQRRER
Subjt:  MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGGGGAAGGCTTCCCAGTGGACATCTCTACTCTAAGCTAGGTCCTCTGAATTTTCTCTGGCTGCCAATCTCTATCAGTTTCATAAATTTTATCAGCCAC
TTCCAACTTCAACAAATGACTCGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCTAAGGATGATGGTTTGACC
CACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTTCTTCCAGTTTCATTATTATGTGTTTGTTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACGGGGAAGGCTTCCCAGTGGACATCTCTACTCTAAGCTAGGTCCTCTGAATTTTCTCTGGCTGCCAATCTCTATCAGTTTCATAAATTTTATCAGCCAC
TTCCAACTTCAACAAATGACTCGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCTAAGGATGATGGTTTGACC
CACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTTCTTCCAGTTTCATTATTATGTGTTTGTTTGTTTGA
Protein sequenceShow/hide protein sequence
MGRGRLPSGHLYSKLGPLNFLWLPISISFINFISHFQLQQMTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERFVYLISSSFIIMCLFV