CuGenDBv2

Gene ID	CmoCh08G010180
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	late embryogenesis abundant protein 1-like
Genome location	Cmo_Chr08:6616830..6617480
RNA-Seq Expression	CmoCh08G010180
Synteny	CmoCh08G010180
Gene Ontology terms	NA
InterPro domains	IPR039624 - Stress-induced protein KIN1/KIN2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031971.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa]

2.1e-20

68.04

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MS+MQQS N  QTK  TQARTEEWMEAT+    +EPRD + ++SAQAQL       S H   QEP +FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

KAG6593802.1 hypothetical protein SDJN03_13278, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-38

100

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Query:  MQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Subjt:  MQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

XP_022964507.1 late embryogenesis abundant protein 1-like [Cucurbita moschata]

7.1e-40

100

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

XP_023000573.1 late embryogenesis abundant protein 1-like [Cucurbita maxima]

1.5e-37

95.51

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MSSMQQSFN DQT+SL+QARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEP TFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

XP_023515164.1 late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo]

1.0e-38

97.75

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MSSMQQS NDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEP TFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LI39 Uncharacterized protein

4.3e-19

65.98

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MS+MQQS N  QTK  TQ RTEEWMEAT+    NEP D + ++SAQAQL       S H   QEP + LQQTGEKMVHMAQ AVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

A0A1S3CCL5 late embryogenesis abundant protein 1 isoform X1

1.0e-20

68.04

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MS+MQQS N  QTK  TQARTEEWMEAT+    +EPRD + ++SAQAQL       S H   QEP +FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

A0A5A7SQZ2 Late embryogenesis abundant protein 1 isoform X1

1.0e-20

68.04

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MS+MQQS N  QTK  TQARTEEWMEAT+    +EPRD + ++SAQAQL       S H   QEP +FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

A0A6J1HHZ6 late embryogenesis abundant protein 1-like

3.4e-40

100

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

A0A6J1KN05 late embryogenesis abundant protein 1-like

7.1e-38

95.51

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Query:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        MSSMQQSFN DQT+SL+QARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEP TFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
Subjt:  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

SwissProt top hits

e value

%identity

Alignment

O49816 Late embryogenesis abundant protein 1

3.8e-04

40.54

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Query:  KSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGD
        K  TQ  TE   E  Q T    R+         + +A   K   A FLQQTGEK+  MAQ A D VK+T GM +
Subjt:  KSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGD

Arabidopsis top hits

e value

%identity

Alignment

AT4G13560.1 Late embryogenesis abundant protein (LEA) family protein

1.4e-06

31.78

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Query:  QQSFNDDQTKSLTQARTEEWMEATQSTG----------------------NEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKET
        QQ FN  Q +   Q + E+W E+ + T                          RD     S  A  SA H++++ A    QTGE + +MAQ A+D VK +
Subjt:  QQSFNDDQTKSLTQARTEEWMEATQSTG----------------------NEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKET

Query:  LGMGDKK
        LGM +KK
Subjt:  LGMGDKK

Sequences

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CDS sequence

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ATGTCTAGCATGCAGCAAAGTTTCAATGATGACCAAACCAAAAGCCTGACTCAGGCAAGAACAGAAGAATGGATGGAAGCCACCCAATCCACAGGCAATGAACCAAGAGA
CATTTTGCCTACTGATTCAGCTCAAGCTCAACTTTCTGCCCACCATGACAAGCAAGAACCTGCTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCATATGGCTCAAG
ATGCTGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

mRNA sequence

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Protein sequence

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MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSAHHDKQEPATFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

CmoCh08G010180 (gene) of Cucurbita moschata (Rifu) v1 genome