CuGenDBv2

Gene ID	CmoCh08G011060
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S3a
Genome location	Cmo_Chr08:7077415..7080515
RNA-Seq Expression	CmoCh08G011060
Synteny	CmoCh08G011060
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001593 - Ribosomal protein S3Ae IPR018281 - Ribosomal protein S3Ae, conserved site IPR027500 - 40S ribosomal protein S1/3, eukaryotes

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138569.1 40S ribosomal protein S3a [Momordica charantia]

2.5e-138

98.08

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK VDPFAKKDWYDIKAPSVF+VKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTD+YTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVE ATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

XP_022930511.1 40S ribosomal protein S3a-like [Cucurbita moschata]

1.4e-141

100

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

XP_022959011.1 40S ribosomal protein S3a-like [Cucurbita moschata]

1.1e-138

98.46

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPE IGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPA+EVVE ATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

XP_023000239.1 40S ribosomal protein S3a-like [Cucurbita maxima]

1.2e-140

99.62

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

XP_023006746.1 40S ribosomal protein S3a-like [Cucurbita maxima]

2.3e-139

98.85

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPA+EVVE ATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CAG4 40S ribosomal protein S3a

1.2e-138

98.08

Show/hide

Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK VDPFAKKDWYDIKAPSVF+VKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTD+YTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVE ATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

A0A6J1ER42 40S ribosomal protein S3a

6.9e-142

100

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

A0A6J1H3P8 40S ribosomal protein S3a

5.5e-139

98.46

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPE IGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPA+EVVE ATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

A0A6J1KJB0 40S ribosomal protein S3a

5.9e-141

99.62

Show/hide

Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

A0A6J1KYM2 40S ribosomal protein S3a

1.1e-139

98.85

Show/hide

Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPA+EVVE ATEVVGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

SwissProt top hits

e value

%identity

Alignment

A5B4K1 40S ribosomal protein S3a-1

1.4e-126

87.74

Show/hide

Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK  DPFAKKDWYDIKAPSVF V+NVGKTLV+RTQGTKIASEGLKHRVFE+SLADLQ DE+ AYRKIRLRAEDVQGRNVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGM+FTTDKLRSLVRKW TLIEAHVDVKTTD+YTLR+FCI FTK+R NQ K+TCYAQSSQIRQIRRKMREIM N ATSCDLKELV+KFIPESIG+ IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADE-VVEEATEVVGA
        TSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RPADE V E  TEV+GA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADE-VVEEATEVVGA

P33444 40S ribosomal protein S3a

9.4e-128

87.36

Show/hide

Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK  DPFAKKDWYDIKAPSVF+V+NVGKTLVTRTQGTKIASEGL+HRVFE+SLADLQ DE+H++RKIRLRAED+QG+NVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGM+FTTDKLRSLVRKW +LIEAHVDVKTTDSYTLRMFCIGFTK+R NQ KRTCYAQSSQIRQIRRKMREIMVNQA SCDLK+LV+KFIPESIG+ IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+DRPA+E V E TEV+GA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPADEVVEEATEVVGA

P49198 40S ribosomal protein S3a

2.1e-127

86.92

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK  DPF+KKDWYDIKAPS+F  +NVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQ+DE+H+YRKIRLRAEDVQG+NVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGM+ TTDKLRSLV+KW +LIEAHVDVKTTD++TLRMFCIGFTK+R NQVKRTCYAQSSQI+QIRRKMREIMV QA +CDLKELV+KFIPESIG+ IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA
        TSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPA+E   EATEV+GA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

Q285L8 40S ribosomal protein S3a

6.7e-126

87.36

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK  DP+AKKDWYDIKAPSVF++KNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQ DE+ ++RKIRLRAEDVQG+NVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGM+FTTDKLRSLV+KW TLIEAHVDVKTTDSYTLRMFCI FTK+RPNQ KRTCYAQSSQIRQIRRKM EIM NQA+SCDLKELV KFIPESIG+ IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEA-TEVVGA
        TSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPADE V EA  E+ GA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEA-TEVVGA

Q8GTE3 40S ribosomal protein S3a

1.9e-128

89.66

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKGKKGGKKK  DPF+KKDWYDIKAPSVF VKNVGKTLV+RTQGTKIASEGLKHRVFE+SLADLQ DE++A+RKIRLRAEDVQG+NVLTNF
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        +GM+FTTDKLRSLVRKW TLIEAHVDVKTTD+YTLRMFCIGFTKRR NQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPE IGK IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEAT-EVVGA
        TSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG KV+ PADE V E T E+VGA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEAT-EVVGA

Arabidopsis top hits

e value

%identity

Alignment

AT3G04840.1 Ribosomal protein S3Ae

7.6e-125

85.5

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKG+KGGKKK VDPF+KKDWYD+KAPS+F  +NVGKTLV+RTQGTKIASEGLKHRVFEVSLADLQ DE++AYRKIRLRAEDVQGRNVL  F
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGM+FTTDKLRSLV+KW TLIEAHVDVKTTDSYTLR+FCI FTKRR NQVKRTCYAQSSQIRQIRRKMR+IMV +A+SCDLK+LV KFIPE+IG+ IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEV-VEEATEVVGA
        T  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVKVDRPADE+ VEE TE++GA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEV-VEEATEVVGA

AT4G34670.1 Ribosomal protein S3Ae

1.3e-124

85.88

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Query:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF
        MAVGKNKRISKG+KGGKKK VDPF+KKDWYD+KAP  F  +NVGKTLV+RTQGTKIASEGLKHRVFEVSLADLQ+DE++AYRKIRLRAEDVQGRNVLT F
Subjt:  MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNF

Query:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA
        WGM+FTTDKLRSLV+KW TLIEAHVDVKTTD YTLRMFCI FTKRR NQVKRTCYAQSSQIRQIRRKM EIMV +A+SCDLKELV KFIPE+IG+ IEKA
Subjt:  WGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKA

Query:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADE-VVEEATEVVGA
        T  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVKVDRPADE +VEE TE++GA
Subjt:  TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADE-VVEEATEVVGA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGTCGGAAAGAACAAGAGGATTTCGAAAGGAAAGAAGGGAGGCAAGAAGAAGACTGTCGACCCATTTGCCAAGAAGGATTGGTACGATATCAAGGCACCTTCTGT
GTTCAATGTCAAGAACGTTGGGAAGACACTCGTTACTCGCACTCAGGGTACCAAGATTGCCTCTGAGGGACTTAAACACCGTGTGTTTGAGGTATCCTTGGCTGACCTTC
AGGATGACGAGGAGCACGCCTACCGAAAGATTAGATTGAGAGCCGAAGATGTTCAAGGAAGGAACGTTCTGACTAATTTCTGGGGAATGAATTTTACTACTGATAAATTG
AGGTCATTGGTGAGGAAGTGGCATACGTTGATTGAAGCTCATGTGGATGTTAAGACCACAGACAGCTATACTCTGAGGATGTTCTGCATTGGATTTACCAAGAGACGCCC
AAACCAGGTCAAAAGGACCTGTTATGCACAATCCAGTCAGATTAGACAGATTCGCCGAAAGATGAGGGAGATCATGGTAAACCAGGCAACGTCCTGTGATCTGAAAGAGT
TGGTTCGTAAGTTTATTCCTGAATCAATTGGAAAAGGAATCGAGAAGGCAACATCTAGCATATACCCTCTACAAAATGTTTTCATTCGGAAGGTCAAGATCTTGAAAGCT
CCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGCGATTATTCAGAAGATGTTGGCGTGAAGGTAGATAGGCCTGCCGATGAAGTTGTCGAGGAGGCCACCGAAGT
TGTTGGGGCTTGA

mRNA sequence

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AAAAAAAAAAAAAGAAAACGAGCCGAGGACCTATTTAAAGAGATGAAATTAGGGTTTTTGGCGCAGCCGTATCTCTCTCGATAGTTTTTCTTCCTCTGGAGCTGCTCTGA
GCTTCCCAACTGGTCTAACCATGGCTGTCGGAAAGAACAAGAGGATTTCGAAAGGAAAGAAGGGAGGCAAGAAGAAGACTGTCGACCCATTTGCCAAGAAGGATTGGTAC
GATATCAAGGCACCTTCTGTGTTCAATGTCAAGAACGTTGGGAAGACACTCGTTACTCGCACTCAGGGTACCAAGATTGCCTCTGAGGGACTTAAACACCGTGTGTTTGA
GGTATCCTTGGCTGACCTTCAGGATGACGAGGAGCACGCCTACCGAAAGATTAGATTGAGAGCCGAAGATGTTCAAGGAAGGAACGTTCTGACTAATTTCTGGGGAATGA
ATTTTACTACTGATAAATTGAGGTCATTGGTGAGGAAGTGGCATACGTTGATTGAAGCTCATGTGGATGTTAAGACCACAGACAGCTATACTCTGAGGATGTTCTGCATT
GGATTTACCAAGAGACGCCCAAACCAGGTCAAAAGGACCTGTTATGCACAATCCAGTCAGATTAGACAGATTCGCCGAAAGATGAGGGAGATCATGGTAAACCAGGCAAC
GTCCTGTGATCTGAAAGAGTTGGTTCGTAAGTTTATTCCTGAATCAATTGGAAAAGGAATCGAGAAGGCAACATCTAGCATATACCCTCTACAAAATGTTTTCATTCGGA
AGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGCGATTATTCAGAAGATGTTGGCGTGAAGGTAGATAGGCCTGCCGATGAAGTT
GTCGAGGAGGCCACCGAAGTTGTTGGGGCTTGAAAATGGATTCTTGAATCAACTTTCTCATATTTACGAATGAACTGTGACTTTTTGTTTTAGTTATAGTTGTATTATGC
TTTCTGCTAAGTTGAGAAATCAGAGATAATCAGCGATTTTGACTATGAAAAATACTTGCTGCTTTTAAGTTAAGTATTATTCCTTGGAACCATTTGAATATGTTCGAATA
GCTTGCATTTGATCGAGTTGCCACCATTTAGTACTTTGTCGTTATCAAATGGTATTATTTATAGTGAAACTCGAGCCTCATCGAGTATTTTCTCACTCACGAATGATGGG
TGACTA

Protein sequence

Show/hide protein sequence

MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKL
RSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKGIEKATSSIYPLQNVFIRKVKILKA
PKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA

CmoCh08G011060 (gene) of Cucurbita moschata (Rifu) v1 genome