CuGenDBv2

Gene ID	CmoCh08G011990
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S21
Genome location	Cmo_Chr08:7617352..7619969
RNA-Seq Expression	CmoCh08G011990
Synteny	CmoCh08G011990
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575063.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

2.7e-38

97.56

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

7.2e-39

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

XP_022959408.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata]

1.2e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]

1.2e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DSM1 40S ribosomal protein S21

1.3e-38

97.56

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1EVJ7 40S ribosomal protein S21

3.5e-39

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1H674 40S ribosomal protein S21

5.9e-39

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1H7Z5 40S ribosomal protein S21-2 isoform X1

5.9e-39

98.78

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1KDN2 40S ribosomal protein S21

3.5e-39

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

2.5e-34

78.05

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQIN+GH+DENG+Y G+F+TFAL G+IRAQGDADSALDRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-2

7.0e-37

83.95

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S21

2.1e-33

76.54

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQIN+GHLD NG+Y G F+TFAL G++RAQGDADS+LDRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-1

1.0e-35

79.27

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S21

4.7e-25

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDEN-GIYTGQFSTFALCGYIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQINVGH+D N G+YTG ++TFALCG++R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDEN-GIYTGQFSTFALCGYIRAQGDADSALDRLWQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

7.2e-37

79.27

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e

7.2e-37

79.27

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e

5.0e-38

83.95

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCGACAAACAGACTTATCACTTCAAAGGACCATGCCTCGGTTCAGATTAACGTCGG
TCACTTAGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTCGCACTCTGCGGTTACATCCGTGCTCAGGGAGATGCGGACAGCGCTTTGGACAGGTTGTGGCAGA
AGAAGAAAGTAGAAGTTCGCCAACAGTAG

mRNA sequence

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TCTTCTTGTTTTTTGTTCGTAGTTCTTCACGCTTCAAGTTTCTAATCATCAAACAGCAGTTTCTCTACTTCCTATTGTCTTCATTTAAATTTTAACGAGTACATGTTTAT
CTCTAGTTCAAATTAAGTCGCCGAAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCGACAAACAGACTTATCACTTCAA
AGGACCATGCCTCGGTTCAGATTAACGTCGGTCACTTAGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTCGCACTCTGCGGTTACATCCGTGCTCAGGGAGAT
GCGGACAGCGCTTTGGACAGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGCCAACAGTAGGAAATGCAATATTTTCCTCTACTTTGAGATTTCATATTTAAGATGTTAAG
CTATATTGCAAATTATGAATGATGAGAGCCTCCCGCGTTAATGTTTTGATGAATGCTTCTAAAGTTGTGTTTGTTGGATTATTACTTCAGTGAAAGTTAGTTTTTGATGA
TTTATTAGTTTATTTATATTTGACTTTTTCGTTCAATTAATTTAGAATTATATCATTTTTTTTAATAAAATGATTATGTTAGGAAT

Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSALDRLWQKKKVEVRQQ

CmoCh08G011990 (gene) of Cucurbita moschata (Rifu) v1 genome