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CmoCh08G012080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G012080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr08:7673549..7676342
RNA-Seq ExpressionCmoCh08G012080
SyntenyCmoCh08G012080
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930226.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]3.4e-58100Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]5.4e-5695.73Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023000010.1 dynein light chain 1, cytoplasmic-like [Cucurbita maxima]4.4e-5899.15Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVD+AIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]3.5e-5594.02Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP+ +ATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]9.9e-5899.15Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNQMVK+VSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A1S3C7T8 Dynein light chain1.2e-5392.31Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP AV  TGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain1.6e-58100Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain2.6e-5695.73Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1KH59 Dynein light chain2.1e-5899.15Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVD+AIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1L253 Dynein light chain1.7e-5594.02Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP+ +ATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic8.2e-3169.77Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic8.2e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic8.2e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic8.2e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic8.2e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.2e-1358.49Show/hide
Query:  KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.9e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein4.4e-4068.38Show/hide
Query:  KRSIQGNQMVKTVSEDRKPM-----AVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        K+S+ G    +T+ +DR+       A    GK+ VIKSADM  D+QKEA+++AI AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNH
Subjt:  KRSIQGNQMVKTVSEDRKPM-----AVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein7.4e-1138.82Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein1.9e-1444.14Show/hide
Query:  QGNQMVKTVSEDRKPMAVATTGKKIV-IKSADMFGDVQKEAVDVA---IVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFY
        +G + V  V  D      A      V I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF 
Subjt:  QGNQMVKTVSEDRKPMAVATTGKKIV-IKSADMFGDVQKEAVDVA---IVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFY

Query:  LDQKAVLLFKS
        +D+  VLLFK+
Subjt:  LDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACGATGCGAAGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGGCGGTGGCGACTACAGGCAAGAAAATCGTCATTAA
GAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGCATTTGAAAAGCATAGTGTAGAGAAAGATGTAGCGGAGTATATTAAGAAAGAGT
TCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTTCATATGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCA
GTTTTACTATTCAAATCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
TAGACTAGAAAGGGCGGTCGTTCTAACGCTGAATTAACTCTTCGAAGAGGCGAAACGACGGCGTATTTGGCAACTGTACTGGAGAACTGATTTCACCGACGGCTTCATTC
GGACAGATTGCAAAAGCTGCAATAAATTCCAGAAAGAGTTAAAAATCTTTTGTCCTCTCAGATTCTGAGAAATTACGATTACCAGTCGAAGTATAAAGTAATTCCAAATT
TCGAAACGAAAAGGTTGCAGAGATTGTGTATAAGCTCCTCTTATTGTAGCATCCACCTACCGAATCGACGAAGATAGGAGAAGAAGCGGAGAAAATGAGCAACGATGCGA
AGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGGCGGTGGCGACTACAGGCAAGAAAATCGTCATTAAGAGTGCCGATATGTTT
GGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGCATTTGAAAAGCATAGTGTAGAGAAAGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGG
ACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTTCATATGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTTTTACTATTCAAAT
CAGGTTGATAAACATGTATATTATGCAGATTAAAGAATGTTATTAACTGATTACGATCATCGCGTTTTAATCAAATGATGATTTCCTTGTGGACAAGACAGTCTTCTTCT
TCTTTTTCCATAACTAATGATTTTTGTTCAAACCACTTTAGCCTTTAAAGTAGACATAATCAGC
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
VLLFKSG