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CmoCh08G012140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G012140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmultiple organellar RNA editing factor 3, mitochondrial
Genome locationCmo_Chr08:7704938..7712470
RNA-Seq ExpressionCmoCh08G012140
SyntenyCmoCh08G012140
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0016554 - cytidine to uridine editing (biological process)
GO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593984.1 Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1741.08Show/hide
Query:  MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPV---VIVNR-----------------------------------CPVVSPSGG----------
        MSLRDGEIKAPQADQVAA AK  GTAEQPPWKMRENPV    ++N+                                    P+  PS            
Subjt:  MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPV---VIVNR-----------------------------------CPVVSPSGG----------

Query:  ----------ISITVLPG------------------------------EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
                  + +   P                               EEEARKEIYSVSTSTYTGFGALIREELSY AILCVFV
Subjt:  ----------ISITVLPG------------------------------EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV

KAG7026324.1 hypothetical protein SDJN02_12825, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-1896.08Show/hide
Query:  MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPVVIVNRCPVVSPSG
        MSLRDGEIKAPQADQVAATAK  GTAEQPPWKMRENPVVIVNRCPVVSPSG
Subjt:  MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPVVIVNRCPVVSPSG

KAG7026325.1 Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-0997.3Show/hide
Query:  EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
        +EEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
Subjt:  EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV

XP_022930369.1 multiple organellar RNA editing factor 3, mitochondrial-like isoform X2 [Cucurbita moschata]4.9e-10100Show/hide
Query:  EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
        EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
Subjt:  EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV

XP_023514439.1 multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo subsp. pepo]2.5e-3050.87Show/hide
Query:  MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPVVIVNRCPVVSPSGGISITVLPG----------------------------------------
        MSLRDGEIKAPQADQ AATAK  GTAEQPPWKMRENPVVIVNRCPVVSPSGGI ITVLPG                                        
Subjt:  MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPVVIVNRCPVVSPSGGISITVLPG----------------------------------------

Query:  ---------------------------------------EEEARKEIYSVSTSTYTGFGALIREELSYKAILC
                                               EEEA+KEIYSVST+TYTGFGALIREELSYKAILC
Subjt:  ---------------------------------------EEEARKEIYSVSTSTYTGFGALIREELSYKAILC

TrEMBL top hitse value%identityAlignment
A0A6A5MKF5 Putative peptidase S8 propeptide/proteinase inhibitor I91.0e-0585.29Show/hide
Query:  VLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        VL  EEEA+K+IYSVSTSTYTGFGALI EELSYK
Subjt:  VLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

A0A6J1ER88 multiple organellar RNA editing factor 3, mitochondrial-like isoform X22.4e-10100Show/hide
Query:  EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
        EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV
Subjt:  EEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFV

A0A7I8IXZ5 Hypothetical protein4.6e-0682.86Show/hide
Query:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        TV+ GEEEA+K+IYSV TSTYTGFGALI EELSYK
Subjt:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

A0A7I8KM93 Hypothetical protein4.6e-0682.86Show/hide
Query:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        TV+ GEEEA+K+IYSV TSTYTGFGALI EELSYK
Subjt:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

I1MRL2 Uncharacterized protein3.6e-0669.57Show/hide
Query:  VLPGEEEARKEIYSVSTSTYTGFGALIREELSYK------AILCVF
        VL  EEEA+K+IYSVSTSTYTGFGALI EELSYK      ++LC+F
Subjt:  VLPGEEEARKEIYSVSTSTYTGFGALIREELSYK------AILCVF

SwissProt top hitse value%identityAlignment
Q84JZ6 Multiple organellar RNA editing factor 3, mitochondrial2.0e-0677.14Show/hide
Query:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        +VL  EEEA+K+IYSV TSTYTGFGALI EELS K
Subjt:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

Arabidopsis top hitse value%identityAlignment
AT1G11430.1 plastid developmental protein DAG, putative9.6e-0457.14Show/hide
Query:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        TVL   EEA+K +Y+ ST+TYTGF   I EE S K
Subjt:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

AT1G72530.1 plastid developmental protein DAG, putative9.6e-0457.58Show/hide
Query:  LPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        L  EEEA++ IYSVST  Y  FG  I E L+YK
Subjt:  LPGEEEARKEIYSVSTSTYTGFGALIREELSYK

AT3G06790.1 plastid developmental protein DAG, putative2.4e-0774.29Show/hide
Query:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        +VL  +EEA+K+IYSV TSTYTGFGALI EELS K
Subjt:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

AT3G06790.2 plastid developmental protein DAG, putative1.4e-0777.14Show/hide
Query:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        +VL  EEEA+K+IYSV TSTYTGFGALI EELS K
Subjt:  TVLPGEEEARKEIYSVSTSTYTGFGALIREELSYK

AT3G15000.1 cobalt ion binding1.9e-0455.88Show/hide
Query:  VLPGEEEARKEIYSVSTSTYTGFGALIREELSYK
        ++  E+EAR +IYSVST  Y  FGAL+ E+LS+K
Subjt:  VLPGEEEARKEIYSVSTSTYTGFGALIREELSYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGTCGTTGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCC
GGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCGGAATCTCGATAACAGTCCTGCCTGGTGAGGAAGAGGCGAGGAAGGAAATATACTCTGTCAGTACAT
CTACCTATACTGGCTTTGGTGCCTTGATTCGGGAAGAGCTTTCTTACAAGGCGATTTTGTGCGTATTCGTGGTATGA
mRNA sequenceShow/hide mRNA sequence
AAATAGAACAAGTTTCGTTGTCTTTCTTGTTGTTGGAAATTATGTCTTTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGTCGTTG
GGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCGGAATCTCGATAACAGTCCTGCCTGG
TGAGGAAGAGGCGAGGAAGGAAATATACTCTGTCAGTACATCTACCTATACTGGCTTTGGTGCCTTGATTCGGGAAGAGCTTTCTTACAAGGCGATTTTGTGCGTATTCG
TGGTATGA
Protein sequenceShow/hide protein sequence
MSLRDGEIKAPQADQVAATAKSLGTAEQPPWKMRENPVVIVNRCPVVSPSGGISITVLPGEEEARKEIYSVSTSTYTGFGALIREELSYKAILCVFVV