; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G012330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G012330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGlycine-rich protein family
Genome locationCmo_Chr08:7805074..7806494
RNA-Seq ExpressionCmoCh08G012330
SyntenyCmoCh08G012330
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594002.1 hypothetical protein SDJN03_13478, partial [Cucurbita argyrosperma subsp. sororia]3.3e-9798.87Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MALVFFPFPRMSISAVAVFY+LTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

KAG7026342.1 hypothetical protein SDJN02_12843, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-7180.23Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MALVFFPFPRMSISAVAVFYLLTSCYLTG                                  IYSACEESYRLKASGNVEVPLEKTEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

XP_022930500.1 uncharacterized protein LOC111436937 [Cucurbita moschata]6.6e-98100Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

XP_023000051.1 uncharacterized protein LOC111494359 [Cucurbita maxima]5.8e-9496.05Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MALVFFPF R+SISAVAVFYLLTSCYL GKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLE+TEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNK VIGFSFIILG+FSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

XP_023514279.1 uncharacterized protein LOC111778597 [Cucurbita pepo subsp. pepo]1.6e-9194.35Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        M LVFFPFPR+SISAVA+FYLLTS YL GKGDDAEGVASSGFVGYEDPPEIVAKAL CFNDKYIYSACEESYRLKASGNVEVPLE+TEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAET KAWRASNKTVIGFSFIIL LFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

TrEMBL top hitse value%identityAlignment
A0A0A0KCE5 Uncharacterized protein6.5e-6772.88Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MAL F  F R+ +SA+ +FYLLT     GK DD E  ++   VG+EDPPEIVAKAL CFND+YIYSACEESYRLK SGN+EVPLEKTEEYC+GPCL ET 
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCI GIFSNFLFYN+ATLQDVRDT+HAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF IL L SL L
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A1S3C8B8 uncharacterized protein LOC1034978048.2e-7074.58Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MAL F  + R+ +SA+ +FYLLT     GK DD E  ++ G VG+EDPPEIVAKAL CFND+YIYSACEESYRLK SGN+EVPLEKTEEYC+GPCL ET 
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCI+GIFSNFLFYN+ATLQDVRDTIHAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF ILGLFSL L
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X19.7e-6378.29Show/hide
Query:  LTGKGDDAEG-VASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVR
        L GKGDD EG  A+SG +GYEDPPEIVAKAL CFNDKYIY ACEES RLK SGNVEVP+EKT+E+C+GPCLGETHLVLDCI+ IF+NFLFYN+ATLQDVR
Subjt:  LTGKGDDAEG-VASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVR

Query:  DTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        DTI AGC YGPQRGNFDV +HIRAE  KA RASN  V+GFSFIILG F   L
Subjt:  DTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A6J1EX17 uncharacterized protein LOC1114369373.2e-98100Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A6J1KET4 uncharacterized protein LOC1114943592.8e-9496.05Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH
        MALVFFPF R+SISAVAVFYLLTSCYL GKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLE+TEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNK VIGFSFIILG+FSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56320.1 BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2)4.0e-2434.73Show/hide
Query:  MSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIF
        M++  V+  +LL +  L      +    + G +G      +V +A  CFN+  +Y  C E++RL   G  +VP E+T+ +C+GPC  ET LVL CI+ + 
Subjt:  MSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIF

Query:  SNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        S+F+FYN+AT +DVR+ +  GC     RGNF+V ++  A+     +A  K    F  ++LG   L L
Subjt:  SNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

AT5G49350.1 Glycine-rich protein family7.4e-3952.38Show/hide
Query:  GKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTI
        G G    G    G +G EDPPEIVAKAL C N+K+IY  C+ES+RL  +G++ +PL +TEE+C GPC  ETHL L+CI+ I  ++ F+N+AT+ D+R+T+
Subjt:  GKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTI

Query:  HAGCGYGPQRGNFDVLEHIRAETDKA
         +GC YGP+RG F+VLEHI  E + A
Subjt:  HAGCGYGPQRGNFDVLEHIRAETDKA

AT5G49350.2 Glycine-rich protein family7.4e-3952.38Show/hide
Query:  GKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTI
        G G    G    G +G EDPPEIVAKAL C N+K+IY  C+ES+RL  +G++ +PL +TEE+C GPC  ETHL L+CI+ I  ++ F+N+AT+ D+R+T+
Subjt:  GKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTI

Query:  HAGCGYGPQRGNFDVLEHIRAETDKA
         +GC YGP+RG F+VLEHI  E + A
Subjt:  HAGCGYGPQRGNFDVLEHIRAETDKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGAAAAGGAGACGACGCCGAGGGTGT
TGCATCCAGCGGTTTTGTTGGTTACGAGGATCCACCCGAGATTGTTGCCAAAGCATTACGATGCTTCAATGATAAATATATATACAGCGCGTGTGAAGAATCGTATAGAT
TAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAGCGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTGCATTGACGGCATTTTT
AGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCGACGTGTTGGAGCACAT
AAGAGCTGAAACAGACAAAGCGTGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTGTTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
TTCCCAAACCTCAACTATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGAAAAGGAG
ACGACGCCGAGGGTGTTGCATCCAGCGGTTTTGTTGGTTACGAGGATCCACCCGAGATTGTTGCCAAAGCATTACGATGCTTCAATGATAAATATATATACAGCGCGTGT
GAAGAATCGTATAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAGCGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTG
CATTGACGGCATTTTTAGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCG
ACGTGTTGGAGCACATAAGAGCTGAAACAGACAAAGCGTGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTGTTCCTTTGA
AATCCTATTATTATTATTATATAATTTTAACATGCCCTGTCTTGTATAAATTATCGAGAAAACTTATGTATTTAATTTCATGATTGATCTTATGTAACAAATAGAGCGAG
Protein sequenceShow/hide protein sequence
MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFNDKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIF
SNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL