CuGenDBv2

Gene ID	CmoCh09G001190
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Genome location	Cmo_Chr09:548708..551421
RNA-Seq Expression	CmoCh09G001190
Synteny	CmoCh09G001190
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591283.1 hypothetical protein SDJN03_13629, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-46

95.28

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAV FVNGVEEVFD TSTP QTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK R 
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDKQ
Subjt:  KAEDKQ

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-46

96.97

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSR
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAV FVNGVEEVFD TSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK R
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSR

XP_022936649.1 uncharacterized protein LOC111443181 [Cucurbita moschata]

7.3e-52

100

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDKQ
Subjt:  KAEDKQ

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

2.4e-47

94.34

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI V FVNGVEEVFD TSTP+QTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK R 
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDKQ
Subjt:  KAEDKQ

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

1.3e-45

94.95

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSR
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI V FVNGVEEVFD TSTP+QTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK R
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F8W0 uncharacterized protein LOC111443181

3.6e-52

100

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDKQ
Subjt:  KAEDKQ

A0A6J1FNY6 uncharacterized protein LOC111445972

8.5e-46

91.51

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI V FVNGVEEVFD TSTP+QTIR MILEKGQLLETEQMFREAGETWPVIIPDEELN P PSIK R 
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDKQ
Subjt:  KAEDKQ

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

1.4e-45

95.88

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI V FVNGVEEVFD TSTP+QTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

1.2e-47

94.34

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI V FVNGVEEVFD TSTP+QTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK R 
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDKQ
Subjt:  KAEDKQ

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

6.5e-46

94.95

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSR
        MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI V FVNGVEEVFD TSTP+QTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK R
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

4.0e-40

75.47

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Query:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK
        +EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI V FVNGVEE FD  +T +Q+IR MIL+KGQ LETEQMFREAGE WPVIIPDEEL Q AP +K R 
Subjt:  MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRK

Query:  KAEDKQ
        KAEDK+
Subjt:  KAEDKQ

Sequences

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CDS sequence

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ATGGAGTTCTTAGCGCAGTGTAATGCTCGCAAGGCCAAGGAGTCGAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGATGACCACCCGCCCCAGATCGCCGTCGC
CTTTGTCAACGGAGTCGAAGAGGTTTTTGACGGTACATCTACTCCTTCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCC
GAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGATGAAGAGCTCAATCAACCCGCTCCCAGTATCAAGTCTAGAAAAAAAGCAGAAGACAAGCAGTAA

mRNA sequence

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TCTTATCGCAGTCCCCAATCATTTTGATCGCAGGTTCGGGCGAAGAGGAAGAAGCAGCTATGTTAAAGTTCTAAATATCGAATTCAATGCCTTAGATCCACGCTTATCAT
CTTGCATGGAGTTCTTAGCGCAGTGTAATGCTCGCAAGGCCAAGGAGTCGAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGATGACCACCCGCCCCAGATCGCC
GTCGCCTTTGTCAACGGAGTCGAAGAGGTTTTTGACGGTACATCTACTCCTTCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAAT
GTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGATGAAGAGCTCAATCAACCCGCTCCCAGTATCAAGTCTAGAAAAAAAGCAGAAGACAAGCAGTAACTTT
AGATGTGAAAGGATTCCGAATCAAGATCTAAATATGGCCTGTGAATCCTGAGTTGGTTTTCATAAGTCATTTGTTTATGAGAACTTGTTATACCAGTACATGCTCTATAA
CTAGTTTGAAATTGACTGGAAGGGGTTTGTTACGCCGTGCTCGTGCTCGTGCTCGTGCTCGTGCTTTCAGAAATATCGGAAAACTACAATTTGCC

Protein sequence

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MEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVAFVNGVEEVFDGTSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKSRKKAEDKQ

CmoCh09G001190 (gene) of Cucurbita moschata (Rifu) v1 genome