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CmoCh09G001500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G001500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 3
Genome locationCmo_Chr09:676769..677056
RNA-Seq ExpressionCmoCh09G001500
SyntenyCmoCh09G001500
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]4.9e-3990.53Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]4.9e-3990.53Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]5.6e-3593.18Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR
        MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]6.6e-44100Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]3.4e-3288.51Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNG
        MASSS T+ A GFYSSWTK+ENKKFEEALA+YDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKNVG NG
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein2.4e-3990.53Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR

A0A1S3CRN8 protein RADIALIS-like 42.4e-3990.53Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR

A0A5A7TE80 Protein RADIALIS-like 32.4e-3990.53Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR

A0A6J1DP29 protein RADIALIS-like 42.7e-3593.18Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR
        MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR

A0A6J1FCU5 protein RADIALIS-like 33.2e-44100Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.8e-1854.64Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR
        MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+  G   NGR   ++KR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR

Q1G3C4 Protein RADIALIS-like 47.9e-1656.1Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 31.3e-1861.63Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN
        MAS+S++S+A     SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN

Q8GW75 Protein RADIALIS-like 52.7e-1653.19Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD
        MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  +VG   RG  D
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD

Q9SIJ5 Protein RADIALIS-like 23.8e-1857.14Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR
        MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK    N   GR   ++KR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.9e-1753.19Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD
        MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  +VG   RG  D
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD

AT1G75250.1 RAD-like 61.2e-1650.57Show/hide
Query:  VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYAD
        + S +R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R   D
Subjt:  VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYAD

AT2G18328.1 RAD-like 45.6e-1756.1Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein2.7e-1957.14Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR
        MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK    N   GR   ++KR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR

AT4G39250.1 RAD-like 12.7e-1954.64Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR
        MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+  G   NGR   ++KR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACC
AGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTC
AAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACC
AGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTC
AAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA
Protein sequenceShow/hide protein sequence
MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR