CuGenDBv2

Gene ID	CmoCh09G001560
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein RADIALIS-like 3
Genome location	Cmo_Chr09:692418..693029
RNA-Seq Expression	CmoCh09G001560
Synteny	CmoCh09G001560
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function) GO:0047429 - nucleoside-triphosphate diphosphatase activity (molecular function)
InterPro domains	IPR001005 - SANT/Myb domain IPR009057 - Homeobox-like domain superfamily IPR017884 - SANT domain IPR044636 - Transcription factor RADIALIS-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591315.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-43

100

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Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

KAG7024198.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.8e-41

96.51

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Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDD
        MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF ++
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDD

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]

1.3e-33

82.35

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Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F+D E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

XP_022976360.1 protein RADIALIS-like 3 [Cucurbita maxima]

6.7e-43

98.85

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Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MAMGSG NWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]

2.8e-33

82.35

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Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MGSGS+WTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF FVD+E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGK8 SANT domain-containing protein

4.4e-32

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Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MGSGSNWTA+QNK FENALAIYDK+TP RW  LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+  PA RGF F+D E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

A0A1S3CPA0 protein RADIALIS-like 3

6.1e-34

82.35

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Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F+D E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

A0A5D3D7Z0 Protein RADIALIS-like 3

6.1e-34

82.35

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Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F+D E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

A0A6J1CC55 protein RADIALIS-like 3

4.8e-31

77.01

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Query:  AMGS-GSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        AMGS GSNWTA+QNK FENALA+YDK+TP RWH LA+AVG KTAEEVKRHY+RLV+DVN+IETGQVPFPNYRK     RGF F+D+E
Subjt:  AMGS-GSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

A0A6J1IJ89 protein RADIALIS-like 3

3.2e-43

98.85

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Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
        MAMGSG NWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

SwissProt top hits

e value

%identity

Alignment

F4JVB8 Protein RADIALIS-like 1

8.0e-23

61.25

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Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRG
        M+  S  +WTA+QNKAFE ALA YD++TP RW  +AK VG KT EEVKRHY+ LV+D+N IE G VPFPNYR  G    G
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRG

Q1A173 Protein RADIALIS-like 6

1.2e-21

71.21

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Query:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+VP PNY+
Subjt:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

Q58FS3 Transcription factor RADIALIS

5.7e-21

62.5

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Query:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPG
        GSG  W+A++NKAFE ALA+YDK+TP RW  +A+AV  +T EEVK+HY+ LVED+  IE+G+VPFPNYR  G
Subjt:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPG

Q8GW75 Protein RADIALIS-like 5

4.4e-21

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Query:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDD
        +M S S+WT++QNK FE ALA+YDK+TP RW  +AKAVGSK+AEEVKRHYD LVED+  IE   VP P Y K    G   R +DD
Subjt:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDD

Q9SIJ5 Protein RADIALIS-like 2

5.7e-21

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Query:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFVDDE
        GSGS WT +QNKAFE ALA+YD++TP RWH +A+AVG KT EE KR YD LV D+  IE G VPFP+Y+   G + RG R  D+E
Subjt:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFVDDE

Arabidopsis top hits

e value

%identity

Alignment

AT1G19510.1 RAD-like 5

3.1e-22

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Query:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDD
        +M S S+WT++QNK FE ALA+YDK+TP RW  +AKAVGSK+AEEVKRHYD LVED+  IE   VP P Y K    G   R +DD
Subjt:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDD

AT1G75250.1 RAD-like 6

8.2e-23

71.21

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Query:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+VP PNY+
Subjt:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

AT1G75250.2 RAD-like 6

8.2e-23

71.21

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Query:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+VP PNY+
Subjt:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

AT2G21650.1 Homeodomain-like superfamily protein

4.1e-22

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Query:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFVDDE
        GSGS WT +QNKAFE ALA+YD++TP RWH +A+AVG KT EE KR YD LV D+  IE G VPFP+Y+   G + RG R  D+E
Subjt:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFVDDE

AT4G39250.1 RAD-like 1

5.7e-24

61.25

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Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRG
        M+  S  +WTA+QNKAFE ALA YD++TP RW  +AK VG KT EEVKRHY+ LV+D+N IE G VPFPNYR  G    G
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRG

Sequences

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CDS sequence

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ATGGCGATGGGGTCTGGTTCGAATTGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAA
AGCCGTCGGCTCGAAGACGGCGGAGGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACAGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAAC
CCGGACCCGCAGGCCGAGGATTTCGCTTTGTTGACGACGAATAA

mRNA sequence

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TGTTTTTGTAGTATTTATACGTCAGAACTGGCCGCCAAATCTGTGATAAAAAATAAAAACCAAGCACTGATCTGAAATTAATAGATATGGCGATGGGGTCTGGTTCGAAT
TGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAAAGCCGTCGGCTCGAAGACGGCGGA
GGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACAGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAACCCGGACCCGCAGGCCGAGGATTTC
GCTTTGTTGACGACGAATAAGATGAGGAGCCTACGCTTGCATTGAAATATGAAGGCTAAATGTAGCTAGTTTTCGTCACCCATCTTTATTGTAATTCCTAGTTTTATATC
TGTAGTCCCAATTTGTTATATAATGAATAAATACTCTATTAATATGAGTTATTATTGTAAATTATTTATTAAGTTCGCTG

Protein sequence

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MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE

CmoCh09G001560 (gene) of Cucurbita moschata (Rifu) v1 genome