; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G002210 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G002210
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncold regulated gene 27
Genome locationCmo_Chr09:1031638..1033996
RNA-Seq ExpressionCmoCh09G002210
SyntenyCmoCh09G002210
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591377.1 Cold-regulated protein 27, partial [Cucurbita argyrosperma subsp. sororia]3.9e-13399.59Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSD SLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

XP_022935854.1 uncharacterized protein LOC111442637 isoform X1 [Cucurbita moschata]2.8e-131100Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

XP_022935855.1 uncharacterized protein LOC111442637 isoform X2 [Cucurbita moschata]1.3e-133100Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

XP_022976397.1 uncharacterized protein LOC111476815 isoform X1 [Cucurbita maxima]5.1e-12596.67Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVH+HFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

XP_022976398.1 uncharacterized protein LOC111476815 isoform X2 [Cucurbita maxima]2.5e-12796.72Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVH+HFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

TrEMBL top hitse value%identityAlignment
A0A0A0L0A2 Polyketide_cyc domain-containing protein1.1e-9678.33Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNL++ N  ETR DSL+SE  KD+STEF+ P+ESSS GTHMTDSVPSDWTDEKHHLFLESME SFVSQMFDS HSVGSCP K+NSS TKL  +SQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASH HS FGQFKVLRRGSWKNINFE TESRSN LN++QALS NPWIHHFRA RKNKNV CKSQAIGS GRN   LGAAN+S P+RA DSDLS QYIS+N
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        +EVSDQNFVDE  EV  GS DC NAKR N  ETNALIN+Q
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

A0A6J1F6L8 uncharacterized protein LOC111442637 isoform X11.4e-131100Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

A0A6J1FBV0 uncharacterized protein LOC111442637 isoform X26.5e-134100Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

A0A6J1IFL9 uncharacterized protein LOC111476815 isoform X12.5e-12596.67Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVH+HFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

A0A6J1IM11 uncharacterized protein LOC111476815 isoform X21.2e-12796.72Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQ

Query:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN
        SASHVH+HFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SDLSLQYISSN
Subjt:  SASHVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 275.0e-1433Show/hide
Query:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN
        D+S++ A  VE   +SS+ +   + + ++WT+EKH L+L+SME SFV Q+++S+ ++G   + EN S +   G  +  S       QFKVL  G W+ IN
Subjt:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN

Query:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN
         +  E R N  +  +     R+PWI H++   K +       ++Q + S  G + +   G+A+  + L +   D   Q      EVSDQNFV+E  +  N
Subjt:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN

Query:  GSS
        GSS
Subjt:  GSS

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)2.2e-0425.74Show/hide
Query:  NAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSD--------WTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSAS
        N V    D  +SE + +  +E  L     S  T  T    +D        WT+EKH+ +L+ +E+SFV Q++  +               +L       S
Subjt:  NAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSD--------WTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSAS

Query:  HVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQ
        + H    QF VL+ G W+ +NF   +S     ++F+
Subjt:  HVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQ

AT4G33980.2 FUNCTIONS IN: molecular_function unknown2.2e-0425.74Show/hide
Query:  NAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSD--------WTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSAS
        N V    D  +SE + +  +E  L     S  T  T    +D        WT+EKH+ +L+ +E+SFV Q++  +               +L       S
Subjt:  NAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSD--------WTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSAS

Query:  HVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQ
        + H    QF VL+ G W+ +NF   +S     ++F+
Subjt:  HVHSHFGQFKVLRRGSWKNINFETTESRSNLLNDFQ

AT5G42900.1 cold regulated gene 273.5e-1533Show/hide
Query:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN
        D+S++ A  VE   +SS+ +   + + ++WT+EKH L+L+SME SFV Q+++S+ ++G   + EN S +   G  +  S       QFKVL  G W+ IN
Subjt:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN

Query:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN
         +  E R N  +  +     R+PWI H++   K +       ++Q + S  G + +   G+A+  + L +   D   Q      EVSDQNFV+E  +  N
Subjt:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN

Query:  GSS
        GSS
Subjt:  GSS

AT5G42900.2 cold regulated gene 273.5e-1533Show/hide
Query:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN
        D+S++ A  VE   +SS+ +   + + ++WT+EKH L+L+SME SFV Q+++S+ ++G   + EN S +   G  +  S       QFKVL  G W+ IN
Subjt:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN

Query:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN
         +  E R N  +  +     R+PWI H++   K +       ++Q + S  G + +   G+A+  + L +   D   Q      EVSDQNFV+E  +  N
Subjt:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN

Query:  GSS
        GSS
Subjt:  GSS

AT5G42900.3 cold regulated gene 272.5e-1633.99Show/hide
Query:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN
        D+S++ A  VE   +SS+ +   + + ++WT+EKH L+L+SME SFV Q+++S+ ++G   + EN S +   G  +  S       QFKVL  G W+ IN
Subjt:  DESTEFALPVE---SSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSWKNIN

Query:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN
         +  E R N  +  +     R+PWI H++   K +       ++Q + S  G + +   G+A+  + L +   D     IS  EEVSDQNFV+E  +  N
Subjt:  FETTESRSNLLN--DFQALSRNPWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGN

Query:  GSS
        GSS
Subjt:  GSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGTTGCCTCCAAATTTGGAGAATCACAACGCCGTAGAAACTCGGACCGACTCACTCATCTCTGAATTGGCCAAGGACGAGTCGACCGAGTTTGCCCTCCCGGT
GGAATCTTCTAGCCTGGGCACTCATATGACGGATTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTATTCCTTGAATCCATGGAGACATCTTTTGTCAGCCAAA
TGTTTGATTCTGTGCATTCAGTTGGTTCCTGCCCCCGCAAGGAAAATTCTTCACACACAAAATTGCACGGCCAAAGCCAATCCGCCTCTCATGTCCATTCACATTTTGGC
CAGTTTAAAGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAAACAACTGAATCTCGGTCGAATTTATTGAATGATTTCCAAGCTCTCTCACGTAATCCTTGGAT
ACATCACTTTCGAGCTGATCGTAAAAACAAAAATGTTGCATGCAAAAGTCAAGCTATCGGTTCAGGAGGAAGGAATTTGTTTCCTTTGGGGGCAGCAAATGATTCAGAAC
CTTTGCGTGCTTGTGATTCTGATTTGTCCCTACAATATATCAGCAGCAATGAAGAAGTGTCAGATCAGAATTTTGTTGATGAAGATAGAGAAGTTGGAAACGGGAGCAGT
GATTGCAGCAATGCCAAAAGGGTCAACACTCCAGAGACCAATGCCTTGATCAATGAACAGCCAGAAGATAGCTAG
mRNA sequenceShow/hide mRNA sequence
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCGCCATTACAAATCTGGAGAGATTATCATTCATCCTCTTGAGCATTCATGGAGTTGTTGCCTCCAAATT
TGGAGAATCACAACGCCGTAGAAACTCGGACCGACTCACTCATCTCTGAATTGGCCAAGGACGAGTCGACCGAGTTTGCCCTCCCGGTGGAATCTTCTAGCCTGGGCACT
CATATGACGGATTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTATTCCTTGAATCCATGGAGACATCTTTTGTCAGCCAAATGTTTGATTCTGTGCATTCAGT
TGGTTCCTGCCCCCGCAAGGAAAATTCTTCACACACAAAATTGCACGGCCAAAGCCAATCCGCCTCTCATGTCCATTCACATTTTGGCCAGTTTAAAGTTCTTCGACGAG
GCAGCTGGAAGAACATTAATTTTGAAACAACTGAATCTCGGTCGAATTTATTGAATGATTTCCAAGCTCTCTCACGTAATCCTTGGATACATCACTTTCGAGCTGATCGT
AAAAACAAAAATGTTGCATGCAAAAGTCAAGCTATCGGTTCAGGAGGAAGGAATTTGTTTCCTTTGGGGGCAGCAAATGATTCAGAACCTTTGCGTGCTTGTGATTCTGA
TTTGTCCCTACAATATATCAGCAGCAATGAAGAAGTGTCAGATCAGAATTTTGTTGATGAAGATAGAGAAGTTGGAAACGGGAGCAGTGATTGCAGCAATGCCAAAAGGG
TCAACACTCCAGAGACCAATGCCTTGATCAATGAACAGCCAGAAGATAGCTAG
Protein sequenceShow/hide protein sequence
MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHHLFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFG
QFKVLRRGSWKNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGNGSS
DCSNAKRVNTPETNALINEQPEDS