; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G002300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G002300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
Genome locationCmo_Chr09:1064897..1068566
RNA-Seq ExpressionCmoCh09G002300
SyntenyCmoCh09G002300
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0005656 - nuclear pre-replicative complex (cellular component)
GO:0097344 - Rix1 complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591385.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5498.18Show/hide
Query:  KGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCI
        KGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVW LSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTD I
Subjt:  KGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCI

Query:  FSAHCLIKEI
        FSAHCLIKEI
Subjt:  FSAHCLIKEI

KAG7025067.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-5698.18Show/hide
Query:  TKGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDC
        ++GRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDC
Subjt:  TKGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDC

Query:  IFSAHCLIKE
        IFSAHCLIKE
Subjt:  IFSAHCLIKE

KAG7037821.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-2971Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

XP_022941447.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]9.3e-2971Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

XP_022982251.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima]9.3e-2971Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

TrEMBL top hitse value%identityAlignment
A0A0A0KZT0 WD_REPEATS_REGION domain-containing protein2.2e-2871Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IVV YGG NAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

A0A5D3D9F7 Protein ROOT INITIATION DEFECTIVE 32.2e-2871Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IVV YGG NAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like1.3e-2869Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLP+T+IVV YGGSN+IIISSSVDRTCKVWSLS GKLLRNIIFPSI+DAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 34.5e-2971Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

A0A6J1IYT8 protein ROOT INITIATION DEFECTIVE 34.5e-2971Show/hide
Query:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL
        YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFPSIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Subjt:  YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL

SwissProt top hitse value%identityAlignment
A0A1L8HX76 WD repeat-containing protein 182.7e-0739.06Show/hide
Query:  HNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGE-RVFYGG
        H+LP+T++    GG  A + +SS+D+T K+W + +G LL +++F   I ++A DP E  +F GG
Subjt:  HNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGE-RVFYGG

Q499N3 WD repeat-containing protein 186.1e-0734.78Show/hide
Query:  HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGER-VFYGG
        H ++ H LP+T++   +GG  A + ++S+D+T K+W++S+G LL +++F   I ++ +D  E  +F GG
Subjt:  HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGER-VFYGG

Q4VBE8 WD repeat-containing protein 186.1e-0734.78Show/hide
Query:  HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGE-RVFYGG
        H ++ H LP+T++   +GG  A + ++S+D+T K+W++S+G LL +++F   I ++ +D  E  +F GG
Subjt:  HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGE-RVFYGG

Q9BV38 WD repeat-containing protein 182.7e-0738.03Show/hide
Query:  HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGE-RVFYGGVE
        H ++ H LP+T++   +GG  A + +SS+D+T K+W +S+G+LL +++F   I A+ +D  E  +F GG E
Subjt:  HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGE-RVFYGGVE

Q9M3B4 Protein ROOT INITIATION DEFECTIVE 32.2e-2573.61Show/hide
Query:  TFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGG
        T YEHNF  H + VT+IV+DYGG NA+IISSS DRTCKVWSLS GKLL+NIIFPS+I+A+ALDPG  VFY G
Subjt:  TFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGG

Arabidopsis top hitse value%identityAlignment
AT3G49180.1 Transducin/WD40 repeat-like superfamily protein1.6e-2673.61Show/hide
Query:  TFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGG
        T YEHNF  H + VT+IV+DYGG NA+IISSS DRTCKVWSLS GKLL+NIIFPS+I+A+ALDPG  VFY G
Subjt:  TFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTAATATTGTTGTTGACTATGGAGGATCCAATGCTATTATAATCTCTTC
CTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAACGTG
TCTTCTATGGTGGTGTAGAGATGAGAAGTTCTACACTGCTGCACTTAATGCTAAATGCCCATCCGGCAGTGCCTACGGATTGCATATTCTCGGCTCATTGTCTAATCAAA
GAAATTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTAATATTGTTGTTGACTATGGAGGATCCAATGCTATTATAATCTCTTC
CTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAACGTG
TCTTCTATGGTGGTGTAGAGATGAGAAGTTCTACACTGCTGCACTTAATGCTAAATGCCCATCCGGCAGTGCCTACGGATTGCATATTCTCGGCTCATTGTCTAATCAAA
GAAATTGTATAATCGAGTCGAAGAGTCTTCGGTGGAATTGTTAGAAAGACATCCACGATTAATGTAAGTTCTAGAACCCTTTTTCCTGGAATAAGATGCGTACATGGTGT
TACTTCTGGAAGTACCTTAAGCTTGTAAGAATATTTTTGATCATGTGGGTGTTTGATTCCGGTTGCATGAGGTAGACATGTTGTGTTTTTTTGGGGCGGGCTTTTTACAT
GAATGAACTGCCAAAAATAATTTCCCACTAGGGAAAAAATTGTTGAAGAGTGAGGTGTTGTATTGAAAGTGGTTGATAGCCGAAACAAAACAAGTGGAAGAAGAGATGCC
CTTTGATGGAATGATTCGTGCAAAATAACCCCAACCCGTCCAAAGTTGAATGCGATGATGATTATAATGTAAAGAAAAGAGAGTTGAAGTTGAGATCTCAGGGGGACCAT
CTCCACTCTTTGTCTCTTTGTTATAATTTTGTGGGTCTGTTCTGTTCTGTTCAGTTCTATTATTTTAACATATCATATCTTATTAACAAGAACTATTAATGTGCTGAGTG
GGGAAGAAAAGATAAGGTGGTGTAAGCAGCGGAAAGAAACTCAGTAACAAAGGATTCTATAGACATTGCTAAGTTAAAGGACACAGCTTTATGTTAGAAACCACGGCTCT
CCATAATGGTAAGATATTTGTCTATTTTGAAC
Protein sequenceShow/hide protein sequence
MTKGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCLIK
EIV