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CmoCh09G002310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G002310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
Genome locationCmo_Chr09:1068726..1069025
RNA-Seq ExpressionCmoCh09G002310
SyntenyCmoCh09G002310
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0005656 - nuclear pre-replicative complex (cellular component)
GO:0097344 - Rix1 complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591385.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia]2.8e-29100Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

KAG7037821.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-2690.77Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVL+VASSS+D GIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACS LRDPA+T+GSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

XP_011654116.2 protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]8.1e-2978.16Show/hide
Query:  HCHK-FSREIETET-LSSSRVRMVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        H HK    +++TET LSSS++ MVLLVASSSID GIGCWDLHTG+EQLRYKSCASP HGLVCVG +FLACS LRDPA+TAGSVLYWS
Subjt:  HCHK-FSREIETET-LSSSRVRMVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

XP_022941447.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]1.0e-2690.77Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVL+VASSS+D GIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACS LRDPA+T+GSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

XP_038898957.1 protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]3.4e-2793.85Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVL+VASSSID GIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACS LRDPA+TAGSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

TrEMBL top hitse value%identityAlignment
A0A0A0KZT0 WD_REPEATS_REGION domain-containing protein5.3e-2689.23Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVLLVASSSID GIGCWDLHTG+EQLRYKSCASP HGLVCVG +FLACS LRDPA+TAGSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

A0A5D3D9F7 Protein ROOT INITIATION DEFECTIVE 35.3e-2690.77Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVLLVASSSID GIGCWDLHTGAEQLRYKSCASP HGLVCVGE+FLACS LRD A+TAGSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like4.1e-2686.15Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVL+VASSSID GIGCWDLHTGAEQLRYKSCASP+HGL+CVG++FLACS LRDPA+TAGS+LYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 34.8e-2790.77Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVL+VASSS+D GIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACS LRDPA+T+GSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

A0A6J1IYT8 protein ROOT INITIATION DEFECTIVE 34.1e-2689.23Show/hide
Query:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        MVL+VASSS+D GIGCWDLHTGAEQL YKSCASPAHGLVCVGERFLACS LRDPA+T+GSVLYWS
Subjt:  MVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

SwissProt top hitse value%identityAlignment
Q9M3B4 Protein ROOT INITIATION DEFECTIVE 33.7e-1662.5Show/hide
Query:  VLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        + ++ASSSID GIG WDL TG EQL++K CASPAHGL  VGE+FLA S L    +T+GS+ YWS
Subjt:  VLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS

Arabidopsis top hitse value%identityAlignment
AT3G49180.1 Transducin/WD40 repeat-like superfamily protein2.6e-1762.5Show/hide
Query:  VLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS
        + ++ASSSID GIG WDL TG EQL++K CASPAHGL  VGE+FLA S L    +T+GS+ YWS
Subjt:  VLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTGCAGCGTCATGTTTCATCAACCGCGGTGTTTGTTCACTGCCACAAATTTTCGAGGGAAATTGAAACTGAAACTCTCTCAAGCTCTCGAGTCAGAATGGTGCT
ACTGGTCGCGTCGTCCTCCATTGATTTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTT
GTGTTGGTGAAAGGTTTCTCGCATGCTCTCTGCTCCGCGATCCTGCTTCCACCGCTGGCTCCGTTCTCTACTGGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTGCAGCGTCATGTTTCATCAACCGCGGTGTTTGTTCACTGCCACAAATTTTCGAGGGAAATTGAAACTGAAACTCTCTCAAGCTCTCGAGTCAGAATGGTGCT
ACTGGTCGCGTCGTCCTCCATTGATTTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTT
GTGTTGGTGAAAGGTTTCTCGCATGCTCTCTGCTCCGCGATCCTGCTTCCACCGCTGGCTCCGTTCTCTACTGGTCTTAG
Protein sequenceShow/hide protein sequence
MSLQRHVSSTAVFVHCHKFSREIETETLSSSRVRMVLLVASSSIDLGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSLLRDPASTAGSVLYWS