CuGenDBv2

Gene ID	CmoCh09G002580
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	F-box protein GID2-like
Genome location	Cmo_Chr09:1152638..1153171
RNA-Seq Expression	CmoCh09G002580
Synteny	CmoCh09G002580
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6591404.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

7.6e-94

95.65

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
        MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA

Query:  LGGFRRLHSLFIWPLTKPQ-------SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        LGGFRRLHSLFIWPLTKPQ       SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
Subjt:  LGGFRRLHSLFIWPLTKPQ-------SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

XP_022937325.1 F-box protein GID2-like [Cucurbita moschata]

1.2e-96

100

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
        MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA

Query:  LGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        LGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
Subjt:  LGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

XP_022977120.1 F-box protein GID2-like [Cucurbita maxima]

9.9e-94

96.67

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
        MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA

Query:  LGGFRRLHSLFIWPLTKPQ---SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        LGGFRRLHSLFIWPLTKPQ   SSSSSTSSS SSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF SRGR
Subjt:  LGGFRRLHSLFIWPLTKPQ---SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

XP_023536623.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.3e-93

94.62

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
        MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA

Query:  LGGFRRLHSLFIWPLTKPQ---------SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        LGGFRRLHSLFIWPLTKPQ         SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
Subjt:  LGGFRRLHSLFIWPLTKPQ---------SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

1.4e-84

91.16

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVP+G GDRKT KKPRA + DC GGG  SD+TGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQ--SSSSSTSSSASSSS--PWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRG
        ALGGFRRLHSLFIWPLTKPQ  SSSSSTSSSASSSS   WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RG
Subjt:  ALGGFRRLHSLFIWPLTKPQ--SSSSSTSSSASSSS--PWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

3.2e-82

84.74

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG----VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVP+G GDRK  KKP+A + D   GG     SDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG----VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSS---------PWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSSS+SSS+SSSS          WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSS---------PWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

A0A1S3BV18 F-box protein GID2-like

6.1e-81

83.68

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV +G GDRK  KKP+A + D   GG    SDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSSTSS----------SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        VLALGGFRRLHSLFIWPLTKPQSSSSS+SS          S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSSTSS----------SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

A0A5A7VFE5 F-box protein GID2-like

6.1e-81

83.68

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV +G GDRK  KKP+A + D   GG    SDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSSTSS----------SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        VLALGGFRRLHSLFIWPLTKPQSSSSS+SS          S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSSTSS----------SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

A0A6J1FA22 F-box protein GID2-like

6.1e-97

100

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
        MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA

Query:  LGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        LGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
Subjt:  LGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

A0A6J1ILD7 F-box protein GID2-like

4.8e-94

96.67

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
        MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLA

Query:  LGGFRRLHSLFIWPLTKPQ---SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR
        LGGFRRLHSLFIWPLTKPQ   SSSSSTSSS SSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF SRGR
Subjt:  LGGFRRLHSLFIWPLTKPQ---SSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.4e-26

43.92

Show/hide

Query:  DGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSST
        +  G  ++    +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL          
Subjt:  DGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSST

Query:  SSSASSSSPW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM
                 W  +  P   G + PP R G+D+V LSLSL SI +++ M
Subjt:  SSSASSSSPW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

1.9e-10

29.85

Show/hide

Query:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWS
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWS

Query:  PFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
            ++   P   W +D++ LSLSL  + YYE++
Subjt:  PFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

3.6e-46

55.36

Show/hide

Query:  GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRL
        G    +T KK ++           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRL
Subjt:  GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRL

Query:  HSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR
        HSL++WPL+KP                           P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  HSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

1.6e-04

30.68

Show/hide

Query:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        ++ V P G   RK    P A+ H C             L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

2.5e-47

55.36

Show/hide

Query:  GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRL
        G    +T KK ++           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRL
Subjt:  GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRL

Query:  HSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR
        HSL++WPL+KP                           P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  HSLFIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR

AT5G48170.1 F-box family protein

1.3e-11

29.85

Show/hide

Query:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWS
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSTSSSASSSSPWS

Query:  PFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
            ++   P   W +D++ LSLSL  + YYE++
Subjt:  PFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGCGAGTTGTTCCGGAGGGGAAAGGGGATCGGAAGACGGAGAAGAAACCCAGGGCGGTTTCCCATGACTGTGATGGAGGAGGCGTCTCCGACAAGACTGGATTTAT
GAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCCAGGACTCTGGCCATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACCGCTGAAGATGAAC
GGCTTTGGGAGCTGATCTGCACTAGGCACTGGGCTAACACCGGCTGTGGCAATCAACAACTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGCCGCCTTCACTCGCTC
TTCATCTGGCCTCTTACCAAGCCCCAGTCCTCCTCCTCCTCCACATCTTCGTCCGCTTCCTCCTCGTCGCCGTGGTCTCCGTTCCCGGCGATGATTGGGTCGAAGCCGCC
AGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTCTCGCTTCTCTCAATTCGATACTACGAAAAGATGAATTTCAGCAGCAGAGGCAGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKRVVPEGKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSL
FIWPLTKPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR

CmoCh09G002580 (gene) of Cucurbita moschata (Rifu) v1 genome