; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G003090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G003090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPre-mRNA-processing protein 40A isoform X1
Genome locationCmo_Chr09:1331505..1333446
RNA-Seq ExpressionCmoCh09G003090
SyntenyCmoCh09G003090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI19366.3 unnamed protein product, partial [Vitis vinifera]2.9e-0834.16Show/hide
Query:  NRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK------KLRPPPC---------------------------TSARKGQKKVQKDGVFEDPFL
        ++ +S+G V F+WENKPG CKA       R  D+D          KL+PPPC                            S++KG  + Q     EDPFL
Subjt:  NRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK------KLRPPPC---------------------------TSARKGQKKVQKDGVFEDPFL

Query:  AAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIR
        AA++EC+    +   K    KT  G   + + NLSCKH   VRDD+L+S   S+L+  V R
Subjt:  AAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIR

KAA0064468.1 hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa]1.3e-4370.68Show/hide
Query:  MTCSNRANSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQKK-VQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGG
        M C+N+ +SRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG KK +QKDG  EDPFLAA+REC++ +DEKNCKLK+NK  FGG
Subjt:  MTCSNRANSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQKK-VQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGG

Query:  W--MNLLGNLSCKHLRAVRDDSLISSPVSKLTI
        W  MN  GNLSCK L AVRDDSLISSPVSK T+
Subjt:  W--MNLLGNLSCKHLRAVRDDSLISSPVSKLTI

KAE8649893.1 hypothetical protein Csa_012691 [Cucumis sativus]1.5e-2565.91Show/hide
Query:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKL
        M C+N+ +SRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+QKDG  EDPFLAA++EC++ +DEK C L
Subjt:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKL

KAG6591440.1 Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]4.9e-7279.44Show/hide
Query:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMN
        MTCSNRA+SRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKT       
Subjt:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMN

Query:  LLGNLSCKHLRAVRDDSLISSPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLL
                                    FVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLE+GLADLL
Subjt:  LLGNLSCKHLRAVRDDSLISSPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLL

KAG7024319.1 hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-7380.22Show/hide
Query:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMN
        MTCSNRA+SRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKT       
Subjt:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMN

Query:  LLGNLSCKHLRAVRDDSLISSPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLLVL
                                    FVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLLVL
Subjt:  LLGNLSCKHLRAVRDDSLISSPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLLVL

TrEMBL top hitse value%identityAlignment
A0A059BJ61 Uncharacterized protein7.1e-0832.68Show/hide
Query:  ANSRGRVAFSWENKPG--------ECKAAVAPPFYRLGDDDLGQKKLRPPPC----------------------------TSARKGQKKVQKDGVFEDPF
        ++ RG V F+WEN+PG        +C+  ++PP   + D      KL PPPC                            +S +KG KK   D    DPF
Subjt:  ANSRGRVAFSWENKPG--------ECKAAVAPPFYRLGDDDLGQKKLRPPPC----------------------------TSARKGQKKVQKDGVFEDPF

Query:  LAAFRECSN----GEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLI
        LAA+REC+     G   K+ K    +  FG    +L N SCK   +VRDD+LI
Subjt:  LAAFRECSN----GEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLI

A0A0A0L2M9 Uncharacterized protein1.5e-4267.69Show/hide
Query:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWM-
        M C+N+ +SRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+QKDG  EDPFLAA++EC++ +DEK CKLK+NK+ FGGWM 
Subjt:  MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWM-

Query:  -NLLGNLSCKHLRAVRDDSLISSPVSKLTI
         N   NLSCK L AVRDDSLISSP SK T+
Subjt:  -NLLGNLSCKHLRAVRDDSLISSPVSKLTI

A0A4D6L0H4 Uncharacterized protein1.6e-0732.12Show/hide
Query:  RANSRGRVAFSWENKPGECKA---------AVAPPFYRLGDD------DLGQKKLRPPPCTSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCK
        +++S G + FSWE+KPG CK           ++P    LG +      ++ +KK+  PPC      +   +K+  F   EDPFL A++EC+  + EKNCK
Subjt:  RANSRGRVAFSWENKPGECKA---------AVAPPFYRLGDD------DLGQKKLRPPPCTSARKGQKKVQKDGVF---EDPFLAAFRECSNGEDEKNCK

Query:  L-KQNKTEFGGWMNLLGNL-SCKHLRAVRDDSLISSP
        + ++NK   G    L  ++ SC+    V+DD  +  P
Subjt:  L-KQNKTEFGGWMNLLGNL-SCKHLRAVRDDSLISSP

A0A5A7VA56 Uncharacterized protein6.1e-4470.68Show/hide
Query:  MTCSNRANSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQKK-VQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGG
        M C+N+ +SRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG KK +QKDG  EDPFLAA+REC++ +DEKNCKLK+NK  FGG
Subjt:  MTCSNRANSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQKK-VQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGG

Query:  W--MNLLGNLSCKHLRAVRDDSLISSPVSKLTI
        W  MN  GNLSCK L AVRDDSLISSPVSK T+
Subjt:  W--MNLLGNLSCKHLRAVRDDSLISSPVSKLTI

E0CNY8 Uncharacterized protein1.4e-0834.16Show/hide
Query:  NRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK------KLRPPPC---------------------------TSARKGQKKVQKDGVFEDPFL
        ++ +S+G V F+WENKPG CKA       R  D+D          KL+PPPC                            S++KG  + Q     EDPFL
Subjt:  NRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQK------KLRPPPC---------------------------TSARKGQKKVQKDGVFEDPFL

Query:  AAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIR
        AA++EC+    +   K    KT  G   + + NLSCKH   VRDD+L+S   S+L+  V R
Subjt:  AAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHLRAVRDDSLISSPVSKLTIFVIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTGCAGCAACAGAGCCAATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGA
CGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGT
TCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGAGTTTGGAGGGTGGATGAACTTGTTGGGTAATTTGTCTTGTAAGCACTTG
AGGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACTAACCATCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCAC
CAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTGCAGCAACAGAGCCAATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGGCGA
CGACGATCTGGGGCAAAAGAAGCTGCGACCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAGACCCTTTTCTTGCGGCGT
TCAGAGAGTGCAGCAATGGAGAGGACGAGAAGAATTGCAAGTTGAAGCAGAATAAAACTGAGTTTGGAGGGTGGATGAACTTGTTGGGTAATTTGTCTTGTAAGCACTTG
AGGGCGGTTCGAGATGACAGTTTGATTAGCTCCCCTGTTTCCAAACTAACCATCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCATACTGGGTTTGGCGCCAC
CAATTTTCCCACCGCAACTTCAAACAACAGCCGTAACTTTGGGTCTCTATTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGGTATTGTGA
Protein sequenceShow/hide protein sequence
MTCSNRANSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTEFGGWMNLLGNLSCKHL
RAVRDDSLISSPVSKLTIFVIRPLRFLTRYHTGFGATNFPTATSNNSRNFGSLFLAFGGLQLEVGLADLLVL