CuGenDBv2

Gene ID	CmoCh09G003140
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA binding
Genome location	Cmo_Chr09:1359626..1361310
RNA-Seq Expression	CmoCh09G003140
Synteny	CmoCh09G003140
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6591445.1 hypothetical protein SDJN03_13791, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-111

97.7

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EFSHSDPGLWSEALSSYPS+IEALGKPNLVSLD+FYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L  KNGGKTGSKRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

XP_022936826.1 uncharacterized protein LOC111443296 [Cucurbita moschata]

1.1e-113

100

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        LGSKNGGKTGSKRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

XP_022977105.1 uncharacterized protein LOC111477273 [Cucurbita maxima]

6.0e-109

95.39

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EF+HSDPGLWSEALSSYPS+IEALGKPNLVSLD+FYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRL DFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL+FAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L  KNGGK G+KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

XP_023536029.1 uncharacterized protein LOC111797290 [Cucurbita pepo subsp. pepo]

1.2e-109

96.31

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EFSHS+PGLWSEAL SYPS+IEALGKPNLVSLD+FYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L  KNGGKTG+KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

XP_038898858.1 uncharacterized protein LOC120086335 isoform X1 [Benincasa hispida]

4.6e-101

90.32

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        MEFS+SDP LW EALSSY S+IEALGKPNL SLD+FYRNELP LLHKRNP+PYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DI KAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFA KLQDKAKELSSEG+IFTPSDVERALWS AIGEK+KG +S+
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L   NGGKTG KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3W6 Uncharacterized protein

1.4e-100

89.86

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        MEFS SDP LW EALS+Y S+IEALGKPNLVSLD+FYRNELP +LHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL FA KL+ KAKELS EG+IFTPSDVERALWS AIGEK+KGS+SQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L   NGGKTG+KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

A0A1S3BUF7 uncharacterized protein LOC103493629 isoform X1

1.4e-100

89.4

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        M+FS+SDP LW EALSSY S+IEALGKPNLVSLD+FYRNELP +LHKR PSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASA+LAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL FA KLQ+KAKELS EG+ FTPSDVERALWS AIGEK+KGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L   NGGKTG+KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

A0A6J1CCK9 uncharacterized protein LOC111010256

1.0e-98

88.94

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EF +SDP LW EALSSYPS+IEALGKPNLVSLD FYRNELP LLHKRNP+PYITT ELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFA  LQ+KAKELSS+GQIFTPSDVERALWS+A GEK+K SQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L  KNG  +G+KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

A0A6J1F8K0 uncharacterized protein LOC111443296

5.1e-114

100

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        LGSKNGGKTGSKRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

A0A6J1ILC1 uncharacterized protein LOC111477273

2.9e-109

95.39

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EF+HSDPGLWSEALSSYPS+IEALGKPNLVSLD+FYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRL DFVSSLDESLVKLASQKAFQCLP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYL+FAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSKNGGKTGSKRKRKT
        L  KNGGK G+KRKRKT
Subjt:  LGSKNGGKTGSKRKRKT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12210.1 DNA binding

6.3e-56

77.54

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EF  SD G+W EALSSY SRIE+L KP LVSLD+FYR +LP LLH R+P+PY+TTSELS+LM+WKL+RGKWRPRLLDFVSSLD+S+VK AS+KAF+ LP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDE
        DISKAV ELT LKGVG ATASAVLAAYAPD+APFMSDE
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDE

AT3G12210.2 DNA binding

3.4e-78

73.04

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Query:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP
        +EF  SD G+W EALSSY SRIE+L KP LVSLD+FYR +LP LLH R+P+PY+TTSELS+LM+WKL+RGKWRPRLLDFVSSLD+S+VK AS+KAF+ LP
Subjt:  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLP

Query:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ
        DISKAV ELT LKGVG ATASAVLAAYAPD+APFMSDEAME ALGNSKDYSLKQYL FA KLQDKAKEL  +G+   PSD+ERALWS  +  K +  +S 
Subjt:  DISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQ

Query:  LGSK
         G K
Subjt:  LGSK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGTGAAGCTCTTTCTTCTTATCCTTCTCGAATCGAAGCCTTAGGCAAGCCGAATTTGGTTTCTCTGGATGAATTTTA
CCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCACTCGCGGAAAATGGAGGC
CGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACT
CCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGCTATGGAAGCGGCTCTTGGCAACTC
CAAGGATTATTCATTGAAGCAATACCTATCCTTCGCAAAAAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAATTTTCACGCCATCTGATGTAGAGAGGG
CTTTGTGGAGTACGGCAATAGGGGAAAAGGTGAAGGGTTCGCAATCACAATTAGGTTCCAAGAATGGAGGCAAAACAGGCTCCAAAAGAAAGAGGAAAACTTGA

mRNA sequence

Show/hide mRNA sequence

TATGAATCCCGAAAACCCCGCCAAGACCAAGAGTTGCATTGCAGCCGCGAAAAAACGCCCGTGAAGAGTGGAGCGGCAACGTCCCATAAGCTGCAATGGAGTTTTCACAC
TCCGATCCAGGCCTCTGGAGTGAAGCTCTTTCTTCTTATCCTTCTCGAATCGAAGCCTTAGGCAAGCCGAATTTGGTTTCTCTGGATGAATTTTACCGGAACGAACTCCC
TCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCACTCGCGGAAAATGGAGGCCGCGGCTATTGGACT
TTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTC
GGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGCTATGGAAGCGGCTCTTGGCAACTCCAAGGATTATTCATT
GAAGCAATACCTATCCTTCGCAAAAAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAATTTTCACGCCATCTGATGTAGAGAGGGCTTTGTGGAGTACGG
CAATAGGGGAAAAGGTGAAGGGTTCGCAATCACAATTAGGTTCCAAGAATGGAGGCAAAACAGGCTCCAAAAGAAAGAGGAAAACTTGATTTCAGCTGGTCCAAGTGAAG
GAGCATGAGGTTCTCGCGTCCCCCTTTTCTCTTTAGTTGGGGCGCTGCCTAACAGCTCATTTATCAAACTTGCTCTTCTTCCATAGATTTGGGACCAGTTTCAAGTGCTT
ATTTAAAACTTCTTTACAAATATTTTACTTTTGAATGTAAATTTGAGGACTTTTGACATGTTTGGATTGATGTTCTAATGCTTAATGAG

Protein sequence

Show/hide protein sequence

MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELT
PLKGVGPATASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERALWSTAIGEKVKGSQSQLGSKNGGKTGSKRKRKT

CmoCh09G003140 (gene) of Cucurbita moschata (Rifu) v1 genome