; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G003530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G003530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 2-like
Genome locationCmo_Chr09:1526309..1529803
RNA-Seq ExpressionCmoCh09G003530
SyntenyCmoCh09G003530
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591477.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6696.88Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFIEARYARAAMEALQGY+FD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSNHDDGR
        DKK DSPALKIQFAHFPFRLPSNHDDGR
Subjt:  DKKTDSPALKIQFAHFPFRLPSNHDDGR

KAG7024360.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-6396.75Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFIEARYARAAMEALQGY+FD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSN
        DKK DSPALKIQFAHFPFRLPSN
Subjt:  DKKTDSPALKIQFAHFPFRLPSN

XP_022936248.1 nuclear speckle RNA-binding protein A-like [Cucurbita moschata]2.1e-69100Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSNHDDGR
        DKKTDSPALKIQFAHFPFRLPSNHDDGR
Subjt:  DKKTDSPALKIQFAHFPFRLPSNHDDGR

XP_022977142.1 RNA-binding protein 1-like isoform X3 [Cucurbita maxima]9.1e-6594.53Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGY+DIRVVHKEPRR GDKATVLCFVEF EARYA+AAMEALQGY+FD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSNHDDGR
        DKK DSPALKIQFAHFPFRLPSNHDDGR
Subjt:  DKKTDSPALKIQFAHFPFRLPSNHDDGR

XP_038896813.1 RNA-binding protein 2-like isoform X2 [Benincasa hispida]5.7e-5988.28Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        M MAD  HERANSL LRTA+ DP SSRESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKA VLCFVEFIEARYAR AMEALQGY+FD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSNHDDGR
        DKK DSP+LKIQFAHFPFRLPSNHDD R
Subjt:  DKKTDSPALKIQFAHFPFRLPSNHDDGR

TrEMBL top hitse value%identityAlignment
A0A1S3BU06 RNA-binding protein 2-like isoform X14.0e-5885.83Show/hide
Query:  MDMADIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEF
        M  ADIGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGY+F
Subjt:  MDMADIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEF

Query:  DDKKTDSPALKIQFAHFPFRLPSNHDD
        DDKK DSPALKIQFAHFPFRLPSNHDD
Subjt:  DDKKTDSPALKIQFAHFPFRLPSNHDD

A0A1S3BUL5 RNA-binding protein 2-like isoform X24.0e-5885.83Show/hide
Query:  MDMADIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEF
        M  ADIGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGY+F
Subjt:  MDMADIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEF

Query:  DDKKTDSPALKIQFAHFPFRLPSNHDD
        DDKK DSPALKIQFAHFPFRLPSNHDD
Subjt:  DDKKTDSPALKIQFAHFPFRLPSNHDD

A0A5D3D938 RNA-binding protein 2-like isoform X14.0e-5885.83Show/hide
Query:  MDMADIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEF
        M  ADIGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGY+F
Subjt:  MDMADIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEF

Query:  DDKKTDSPALKIQFAHFPFRLPSNHDD
        DDKK DSPALKIQFAHFPFRLPSNHDD
Subjt:  DDKKTDSPALKIQFAHFPFRLPSNHDD

A0A6J1FCR4 nuclear speckle RNA-binding protein A-like1.0e-69100Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSNHDDGR
        DKKTDSPALKIQFAHFPFRLPSNHDDGR
Subjt:  DKKTDSPALKIQFAHFPFRLPSNHDDGR

A0A6J1IHM4 RNA-binding protein 1-like isoform X34.4e-6594.53Show/hide
Query:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD
        MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGY+DIRVVHKEPRR GDKATVLCFVEF EARYA+AAMEALQGY+FD
Subjt:  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFD

Query:  DKKTDSPALKIQFAHFPFRLPSNHDDGR
        DKK DSPALKIQFAHFPFRLPSNHDDGR
Subjt:  DKKTDSPALKIQFAHFPFRLPSNHDDGR

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A2.9e-2140.52Show/hide
Query:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTD
        IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+ +       VLCFV+F     A  A+ ALQGY  D+ ++D
Subjt:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTD

Query:  SPALKIQFAHFPFRLP
        S  L++QF+  P   P
Subjt:  SPALKIQFAHFPFRLP

F4HWF9 Nuclear speckle RNA-binding protein B1.7e-2137.9Show/hide
Query:  DIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKT
        D+G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V ++ +      TVLCFV+F  +  A  A+ ALQ Y  D+ + 
Subjt:  DIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKT

Query:  DSPALKIQFAHFPFRLPSNHDDGR
        DS  L++QF   P   P      R
Subjt:  DSPALKIQFAHFPFRLPSNHDDGR

G7ID19 RNA-binding protein 24.2e-2043.3Show/hide
Query:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFR
        P+    S+ ++V+GLP+D T+REV H+FRPF+GY+++R+V KE +  G    +LCFV+F     A  A+ ALQGY+ D+   +S  L++QF+  P R
Subjt:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFR

Q6JB11 Protein MATERNALLY EXPRESSED GENE 51.0e-1846.51Show/hide
Query:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPA
        P+    S+ ++++GLP +CTRREV H+FRPF+G++++R+V+KE R  G    VLCFV+F     A  A+EALQG+  DD    +PA
Subjt:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPA

Q8H0P8 RNA-binding protein 11.4e-2047.19Show/hide
Query:  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAHFP
        S  ++++GLP+DCTRREV H+FRPF+GY+++R+V KE +  GD   +LCFV+F     A  A+ ALQGY+ D+   +S  L++QF+ +P
Subjt:  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAHFP

Arabidopsis top hitse value%identityAlignment
AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.8e-0632.98Show/hide
Query:  ISSRESNIIFVDGLPTDCTRREVGHLFRPF--IGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAH
        +SSR S  ++V  LP D   REV  LF  +  +   D++V  + P           FVEF +AR A  A+    GY+FD  +     L+++ AH
Subjt:  ISSRESNIIFVDGLPTDCTRREVGHLFRPF--IGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAH

AT1G21320.1 nucleotide binding;nucleic acid binding1.2e-2237.9Show/hide
Query:  DIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKT
        D+G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V ++ +      TVLCFV+F  +  A  A+ ALQ Y  D+ + 
Subjt:  DIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKT

Query:  DSPALKIQFAHFPFRLPSNHDDGR
        DS  L++QF   P   P      R
Subjt:  DSPALKIQFAHFPFRLPSNHDDGR

AT1G21320.2 nucleotide binding;nucleic acid binding1.2e-2237.9Show/hide
Query:  DIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKT
        D+G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V ++ +      TVLCFV+F  +  A  A+ ALQ Y  D+ + 
Subjt:  DIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKT

Query:  DSPALKIQFAHFPFRLPSNHDDGR
        DS  L++QF   P   P      R
Subjt:  DSPALKIQFAHFPFRLPSNHDDGR

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-2240.52Show/hide
Query:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTD
        IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+ +       VLCFV+F     A  A+ ALQGY  D+ ++D
Subjt:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTD

Query:  SPALKIQFAHFPFRLP
        S  L++QF+  P   P
Subjt:  SPALKIQFAHFPFRLP

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-2240.52Show/hide
Query:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTD
        IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+ +       VLCFV+F     A  A+ ALQGY  D+ ++D
Subjt:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTD

Query:  SPALKIQFAHFPFRLP
        S  L++QF+  P   P
Subjt:  SPALKIQFAHFPFRLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGCAGACATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACT
TCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGTGTGGAGATAAGGCTA
CGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACGAGTTCGATGACAAAAAAACTGATTCCCCTGCTTTGAAG
ATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAGCCAAGCCTGGATTGAGGACAATATCTTACCATTGTGGAGAGTCGTAACCGGAGAAAGACGAGACCGCGGGAAGGTCGCAGTTGCAGCGGAAGCAGAGCAG
ACGGCCAAGCCATGGGAGAGGATGCGTATACCAGATAGCAGATAGAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACC
CTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGATCTCCATTTGAAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTG
GGCAGTAGTCCAGGACTGATGGATATGGCAGACATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACAT
TATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGAC
GGTGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACGAGTTCGATGACAAAAAAACT
GATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA
Protein sequenceShow/hide protein sequence
MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALK
IQFAHFPFRLPSNHDDGR