| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6591530.1 DNA-directed RNA polymerase D subunit 2b, partial [Cucurbita argyrosperma subsp. sororia] | 1.2e-107 | 84.34 | Show/hide |
Query: MYIFCPQKYLCGFYSLAPGVSSAKEIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNV
MYIFCPQKYLCGFYSLAPGVSSAKEIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNV
Subjt: MYIFCPQKYLCGFYSLAPGVSSAKEIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNV
Query: HLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDD--SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLSTMTSGQLLEAALGKGI
HLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDD + G +ES A ++ TSGQLLEAALGKGI
Subjt: HLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDD--SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLSTMTSGQLLEAALGKGI
Query: ASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVGQKCKNAASVIQQS
ASGGCLKSATPFSTPSVDAITDRLHSL DSSQMHV QKCKN ASVIQQS
Subjt: ASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVGQKCKNAASVIQQS
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| KAG7024417.1 DNA-directed RNA polymerase D subunit 2b, partial [Cucurbita argyrosperma subsp. argyrosperma] | 1.8e-143 | 79.71 | Show/hide |
Query: YLCGFYSLAPGVSSAKEIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQED
YLCGFYS GVSSAKEIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQED
Subjt: YLCGFYSLAPGVSSAKEIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQED
Query: SLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDD-------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRL--
SLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDD SGNIVIGGCAESGADHSIKLKHTVKG+V++ L
Subjt: SLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDD-------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRL--
Query: ------------------------------STMTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVGQKCKNAASVIQQSVASG
S TSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHV QKCKNAASVIQQSVASG
Subjt: ------------------------------STMTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVGQKCKNAASVIQQSVASG
Query: HKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVIEFETQLC
HKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVIEFETQLC
Subjt: HKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVIEFETQLC
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| XP_008452849.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo] | 4.1e-92 | 49.66 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| XP_022940261.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita moschata] | 9.2e-92 | 49.43 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| XP_038897771.1 DNA-directed RNA polymerases IV and V subunit 2-like [Benincasa hispida] | 1.4e-92 | 49.89 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE IRSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIASGG LK ATPFSTPSVDAIT++LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0L319 DNA-directed RNA polymerase subunit beta | 1.0e-91 | 49.43 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSH GILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE IRSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN ASVIQ+SVA G K+RGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| A0A1S3BUT1 DNA-directed RNA polymerase subunit beta | 2.0e-92 | 49.66 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| A0A5D3D8Y5 DNA-directed RNA polymerase subunit beta | 2.0e-92 | 49.66 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| A0A6J1FHZ2 DNA-directed RNA polymerase subunit beta | 4.5e-92 | 49.43 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| A0A6J1IXN3 DNA-directed RNA polymerase subunit beta | 4.5e-92 | 49.43 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+FRVDTL+HQLHYPQ+PLFRT ADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
R SDD SG+IVIG CAESGADHSIKLKHT KG+V++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
T GQLLEAALGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: ----------------------------------MTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH--------------------------
Query: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGP
Subjt: ------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGP
Query: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
YCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: YCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P30876 DNA-directed RNA polymerase II subunit RPB2 | 3.7e-11 | 43.62 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNK
H R+DTL H L+YPQKPL T + YL E G N+IVA+ + G NQEDS++MNR++++RG FRS RSYK + K
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNK
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| P38420 DNA-directed RNA polymerase II subunit 2 | 3.7e-11 | 46.07 | Show/hide |
Query: FRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAE
FR+DTL + L+YPQKPL T + L H LP G NAIVA++ + G NQEDS++MN++S++RG FRS RSY+ E
Subjt: FRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAE
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| Q8CFI7 DNA-directed RNA polymerase II subunit RPB2 | 3.7e-11 | 43.62 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNK
H R+DTL H L+YPQKPL T + YL E G N+IVA+ + G NQEDS++MNR++++RG FRS RSYK + K
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNK
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| Q9LK40 DNA-directed RNA polymerases IV and V subunit 2 | 1.9e-55 | 36.5 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
+ D+ +G+IVIG C ESGADHSIKLKHT +GIV++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
T GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: ----------------------------------MTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
Query: -----------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQ
+LSDSSQMH+ +KCK A+VI++
Subjt: -----------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQ
Query: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
+ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| Q9LV32 DNA-directed RNA polymerase D subunit 2b | 1.1e-55 | 36.42 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
+ D+ +G+IVIG C ESGADHSIKLKHT +GIV++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
T GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: ----------------------------------MTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
Query: ------------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQ
+LSDSSQMH+ +KCK A+VI+
Subjt: ------------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQ
Query: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
++ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT3G18090.1 nuclear RNA polymerase D2B | 7.9e-57 | 36.42 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
+ D+ +G+IVIG C ESGADHSIKLKHT +GIV++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
T GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: ----------------------------------MTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
Query: ------------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQ
+LSDSSQMH+ +KCK A+VI+
Subjt: ------------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQ
Query: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
++ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| AT3G23780.1 nuclear RNA polymerase D2A | 1.3e-56 | 36.5 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
+ D+ +G+IVIG C ESGADHSIKLKHT +GIV++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
T GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: ----------------------------------MTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
Query: -----------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQ
+LSDSSQMH+ +KCK A+VI++
Subjt: -----------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQ
Query: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
+ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| AT3G23780.2 nuclear RNA polymerase D2A | 1.3e-56 | 36.5 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
+ D+ +G+IVIG C ESGADHSIKLKHT +GIV++ LS+
Subjt: RNSDD------------------------------SGNIVIGGCAESGADHSIKLKHTVKGIVRRTRLST------------------------------
Query: ----------------------------------MTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
T GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: ----------------------------------MTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
Query: -----------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQ
+LSDSSQMH+ +KCK A+VI++
Subjt: -----------------------------------------------------------------------------SLSDSSQMHVGQKCKNAASVIQQ
Query: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
+ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| AT4G21710.1 DNA-directed RNA polymerase family protein | 2.7e-12 | 46.07 | Show/hide |
Query: FRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAE
FR+DTL + L+YPQKPL T + L H LP G NAIVA++ + G NQEDS++MN++S++RG FRS RSY+ E
Subjt: FRVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAE
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| AT4G21710.1 DNA-directed RNA polymerase family protein | 5.9e-04 | 36.11 | Show/hide |
Query: ITDRLHSLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI
+ +RL SD+ ++HV + C A + K CR C++ D+V+V +PY KLL QEL SM I
Subjt: ITDRLHSLSDSSQMHVGQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI
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| AT5G45140.1 nuclear RNA polymerase C2 | 4.8e-06 | 38.46 | Show/hide |
Query: RVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFR
R+DTL + L YPQ+PL T + +G + GQNA VAV G + ED++VMN++SL+RG R
Subjt: RVDTLTHQLHYPQKPLFRTTPADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFR
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